SILENT_MODE BLOCK_FILE jp_jYDpykY.concise.blc MAX_NSEQ 789 MAX_INPUT_LEN 791 OUTPUT_FILE jp_jYDpykY.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 232 778 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 779 232 788 H SPACE SUB_CHARS 1 779 232 788 E SPACE SUB_CHARS 1 779 232 788 - SPACE STRAND 44 782 48 COLOUR_TEXT_REGION 44 782 48 782 51 STRAND 54 782 59 COLOUR_TEXT_REGION 54 782 59 782 51 STRAND 77 782 81 COLOUR_TEXT_REGION 77 782 81 782 51 HELIX 24 782 36 COLOUR_TEXT_REGION 24 782 36 782 50 HELIX 60 782 70 COLOUR_TEXT_REGION 60 782 70 782 50 HELIX 84 782 97 COLOUR_TEXT_REGION 84 782 97 782 50 HELIX 101 782 122 COLOUR_TEXT_REGION 101 782 122 782 50 HELIX 126 782 133 COLOUR_TEXT_REGION 126 782 133 782 50 HELIX 138 782 146 COLOUR_TEXT_REGION 138 782 146 782 50 HELIX 151 782 169 COLOUR_TEXT_REGION 151 782 169 782 50 HELIX 173 782 190 COLOUR_TEXT_REGION 173 782 190 782 50 HELIX 195 782 205 COLOUR_TEXT_REGION 195 782 205 782 50 STRAND 4 787 5 COLOUR_TEXT_REGION 4 787 5 787 51 STRAND 44 787 48 COLOUR_TEXT_REGION 44 787 48 787 51 STRAND 54 787 59 COLOUR_TEXT_REGION 54 787 59 787 51 STRAND 77 787 81 COLOUR_TEXT_REGION 77 787 81 787 51 HELIX 24 787 36 COLOUR_TEXT_REGION 24 787 36 787 50 HELIX 62 787 70 COLOUR_TEXT_REGION 62 787 70 787 50 HELIX 84 787 96 COLOUR_TEXT_REGION 84 787 96 787 50 HELIX 102 787 121 COLOUR_TEXT_REGION 102 787 121 787 50 HELIX 126 787 133 COLOUR_TEXT_REGION 126 787 133 787 50 HELIX 138 787 146 COLOUR_TEXT_REGION 138 787 146 787 50 HELIX 151 787 159 COLOUR_TEXT_REGION 151 787 159 787 50 HELIX 161 787 169 COLOUR_TEXT_REGION 161 787 169 787 50 HELIX 173 787 189 COLOUR_TEXT_REGION 173 787 189 787 50 HELIX 195 787 205 COLOUR_TEXT_REGION 195 787 205 787 50 STRAND 7 788 11 COLOUR_TEXT_REGION 7 788 11 788 51 STRAND 44 788 49 COLOUR_TEXT_REGION 44 788 49 788 51 STRAND 54 788 58 COLOUR_TEXT_REGION 54 788 58 788 51 STRAND 77 788 81 COLOUR_TEXT_REGION 77 788 81 788 51 STRAND 139 788 140 COLOUR_TEXT_REGION 139 788 140 788 51 HELIX 24 788 36 COLOUR_TEXT_REGION 24 788 36 788 50 HELIX 59 788 70 COLOUR_TEXT_REGION 59 788 70 788 50 HELIX 84 788 133 COLOUR_TEXT_REGION 84 788 133 788 50 HELIX 145 788 169 COLOUR_TEXT_REGION 145 788 169 788 50 HELIX 173 788 191 COLOUR_TEXT_REGION 173 788 191 788 50 HELIX 195 788 204 COLOUR_TEXT_REGION 195 788 204 788 50