SILENT_MODE
BLOCK_FILE jp_YfArdEB.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_YfArdEB.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 35   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 36 121 45 H SPACE
SUB_CHARS 1 36 121 45 E SPACE
SUB_CHARS 1 36 121 45 - SPACE
STRAND 26 39 30
COLOUR_TEXT_REGION 26 39 30 39 51
HELIX 3 39 15
COLOUR_TEXT_REGION 3 39 15 39 50
HELIX 31 39 43
COLOUR_TEXT_REGION 31 39 43 39 50
HELIX 46 39 60
COLOUR_TEXT_REGION 46 39 60 39 50
HELIX 81 39 94
COLOUR_TEXT_REGION 81 39 94 39 50
HELIX 98 39 106
COLOUR_TEXT_REGION 98 39 106 39 50
STRAND 26 44 30
COLOUR_TEXT_REGION 26 44 30 44 51
HELIX 2 44 15
COLOUR_TEXT_REGION 2 44 15 44 50
HELIX 32 44 43
COLOUR_TEXT_REGION 32 44 43 44 50
HELIX 46 44 60
COLOUR_TEXT_REGION 46 44 60 44 50
HELIX 81 44 94
COLOUR_TEXT_REGION 81 44 94 44 50
HELIX 98 44 105
COLOUR_TEXT_REGION 98 44 105 44 50
HELIX 113 44 114
COLOUR_TEXT_REGION 113 44 114 44 50
STRAND 26 45 29
COLOUR_TEXT_REGION 26 45 29 45 51
HELIX 3 45 15
COLOUR_TEXT_REGION 3 45 15 45 50
HELIX 30 45 44
COLOUR_TEXT_REGION 30 45 44 45 50
HELIX 46 45 59
COLOUR_TEXT_REGION 46 45 59 45 50
HELIX 80 45 94
COLOUR_TEXT_REGION 80 45 94 45 50
HELIX 98 45 106
COLOUR_TEXT_REGION 98 45 106 45 50
HELIX 110 45 111
COLOUR_TEXT_REGION 110 45 111 45 50