QUERY : GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE : QUERY
UniRef90_UPI00032A7C30 : --LTRRAAMYQDYMEQIPIPSRRASVIPFTSWIGLGKSIKKLYRQPLHYLTNVILKQWDQSRIGNEDEYRRLDDIIHPCKAEATIWLMEQIHRQTSSHFHIANLWKVDPMYNGFVDSIFP- : UniRef90_UPI00032A7C30
UniRef90_V4S8L1 : GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSIVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI--- : UniRef90_V4S8L1
UniRef90_D7T717 : -VVIRRAEMYQEYMKQIPIPARRGSLIPFDTWMGLAKSIKQLYGQPLHYLTNILVKQWDQLRIGSKDENRSLDSIIHPSKAEASIWLIEEVHRQTTSPHHMAKLWLSDPMHYAFVDSIFPQ : UniRef90_D7T717
UniRef90_W9QYP0 : GTLIKRAELYQDYMKQIPIPTHRGSLIPFTSWMGLGKSIKQMYGQPLHYLTNVQLKHWDQLRIGSEEEDRPLDTIVHPSKAEATIWLLEEVHRRTTSHYHIAKLWLLDPMHHAFVDSIFPQ : UniRef90_W9QYP0
UniRef90_A0A059B4W0 : GDLIKRAEMYQQYMNQITIPTHRGSLIPFTSWMGLGKSIKQLYGQPLHYLTNVVLKQWDQERIGSGTEDEPLDMIIHPVKAEAMIWLIEEVHRRTSSHYYIAKLWESDPLYHTFVDSVFPE : UniRef90_A0A059B4W0
UniRef90_B9HK00 : GVLIRRAEMYQDYMRHIPIPVQRGSAIPFSSWAGLGKSIKQLYQQPLHYLTNILLNKWDQQRIGSEDEHTPLDIMIHPCKAEATIWLVEEVHRRTSSHHHVAKIWQSDPMHHAFVDSIFPK : UniRef90_B9HK00
UniRef90_Q67IW5 : GALIRKAEMYQEYMKHIPVPAHRGSVIPCTTWLGLGRSVKQLYKQPLHYLTNVLLKQWDQQRVGSDDEHRPLDAIIHPVKAEALIWITEEVHRLTTSSQHLASLWASAPMYHAYIDPVFP- : UniRef90_Q67IW5
UniRef90_C4IYE3 : GALIRRAEMYQQYMKRIPVPAYRDSVIPFTSWLGLAGSLKQLYEQPLHYLTNVLLKKWDQQRIGSDDEHRRLDAIIHPARAETLVWATEEVHRLTTSGQHLASLWASDPMYHAHVDPVF-- : UniRef90_C4IYE3
UniRef90_V4M664 : --LMRRAEMYQDYMRRFPIPTNRCSVIPFTSWVGLGNSIKELYGQPLHYLTNVLLQRWDQSRVGSDSEDQCLDSIIHPSNAEATIWFVEEIHRLTSSRFELARLWGSDPMYHSFIDSITP- : UniRef90_V4M664
UniRef90_I3SID6 : -VLIKRAGMYQDYMKQIPIPSHRGSVIPFTSWMGLGRSLKQLYGQPLHYLTNVLLKQWDQRRIGSADELTPLDDIIHPCKAEAMVWLAEEVHRKTSSHFQIADLWMLDPKYNAFLDSIFPK : UniRef90_I3SID6
UniRef90_F2DN05 : GALIRRAEMYQEYMKHIPIPDHCSSLIPSTSWLGLGRSVKQLYEQPLHYLTNILLRQWDQQRVGSDNEHQPLDAIIHPMKAQALIWATEEIHRLTTSSDYLGKLWAKDPMYHAYIDPVFP- : UniRef90_F2DN05
UniRef90_W1P3N0 : -ALMRRAKMYEEYMRDIPIPSHRKAVIPFNSWQGLAKSMKQLYGQPLHYLTNVLLKEWDHSNDGVNHDGRLLDEIFHPVRAEAIVWAVEEIHRLTSSHHHLAKLWAEVPLHQAYVDAIHPQ : UniRef90_W1P3N0
UniRef90_K4CVM5 : GVILRKAKMYQEYMQMVPIPARKASVIPCNSWIGLAASIKGLYGQPLHYLTNLSIKKWDSLRIGASDEDVPLDILIDPAKAEAGIWLIEEMHRKTTSPYFIARLWHADPMYHANIDEIFPD : UniRef90_K4CVM5
UniRef90_K4CZN8 : --------MYQEYMKVVAMPTQRGFVIPFTSWVGLAASMKELYGQPLHYLTNVHMKKLDSMRFGSDDEDVPLDTIIDPRKAEATIWLIEEVHRSTSSHHYIARLWLADPMYHIHVDAIFPK : UniRef90_K4CZN8
UniRef90_A0A022RLV7 : --LFRRAKSYQEYMKLIPIPAKRGTIIPYTSWTGLGSSIKQIYEQPLHYLTNLHLRNLDQERFGAENENIPLDTIVHPSKAEASIWLVEEINRKTSSPHHLAKMWNDCSMYHAFIDPVFPK : UniRef90_A0A022RLV7
UniRef90_UPI00046DE3AC : -VVLKIAKHYQEQMKHIPIPRNRRKDAIFVTWWALANSMKQFYGQPLHYMTQVLAKQWDESRIGSVEEEKPMDNIIHPRRAESTIWDVEQVHRQCTSHIHLAKLWLSDPEYYAFVDEVIP- : UniRef90_UPI00046DE3AC
UniRef90_S8DLI1 : --LFRRAKSYQDYMSLIPIPMERGTLLPCQTWWDLGNSLKKMYGQPLHYLTNVHLNYLDRHRIGSKDEHVPLYMTLHPAKAEASLWIIEEAHRKTTSPHHLLKLWQADSGYHRFIDPVFPK : UniRef90_S8DLI1
UniRef90_B9HHY0 : --MMRKAEIYQEYMKQIPIPSSTCGLISYMTWQELARTIKQVYGQPLHYLTNKLLKQWDQLRIGTKDESKPLDNIIDPNRAVATIWGMEEFHRQCSSHQHLARLWLSDPLQHDSLDKTVP- : UniRef90_B9HHY0
UniRef90_UPI00032A5D78 : -DLVELATKYQKMMKKISIPTGRVQYGVVVNWQCLAKTMKLLYGQPLHYLTHMLCKQWDESWFESEDGEQPLDIMIKWSNAEATLWNVEEVHRLCTSPIHLAKLWLNDPEYCTFVHEVIP- : UniRef90_UPI00032A5D78
UniRef90_B9RM31 : ----KAAEKYQQGMKLIPIPPSHASPILFITWQGLARSIKQKYEQPLHYLTMKLLKEWDQSRLGSVEERKPLEDIIDPVKAEATIWVVEHFHRQCSSPGHLSKLWLSDPTYQDFID----- : UniRef90_B9RM31
UniRef90_UPI0003DE7C68 : -ALVKLAKKYQKHMQNKPIPTSRNKEIMVVNWKGLAKTLERMYGQPLHYLTHKLCKEWDKSRFGSKNEEKPLNAIINWRDAEDTIWKVEAVHRLCTSPIHLAMLWLDDPTYHIFVNEVI-- : UniRef90_UPI0003DE7C68
UniRef90_M1DJW7 : ------------------MPTQRGIVIPFTSWVGFAASMKEFYGQPLHYLTNVQMKKFDQMRLGADNEDVPLDNIIDSGKAEATIWIIEEVHMCTLSHHYITRLWLADPMYHRHVDAIFPE : UniRef90_M1DJW7
UniRef90_A5C310 : ------ANAYQQYMKQLPIPSKHCETIPNITWRELGNSMKQLYGQPLHYLTNLMLQRWDDSRIGSENEHKPMHSIIEPSVAESTIWVVEEFHRRSTSTQHVATLWINDPKYSAFIDPI--- : UniRef90_A5C310
UniRef90_V7B2W8 : -ALLELAKEYQEKMEKKSIPRHGSKEMVVVSWKGLAKTLKTLYGQPLHYLTQKLCKEWDKSRFGSDNEEKPLNAMFSWREAEDTVWRVEAVHRLCTSPVHLAVLWLDDPEYLLIANEVIP- : UniRef90_V7B2W8
UniRef90_K4CVM0 : --------MYQEYQQMIPIPTRKASLIPCNSWIGLAASIKGLYGQLLHYPTNLSIKKCDSLRIGASDEDVPLDTLIDPAKAEASIWLIEEMHRKTTSPHFIARL----------------- : UniRef90_K4CVM0
UniRef90_G7K3Q4 : --IIRRAAMYQNYMEQIPILTSRGSVIPSTLWMGLGKSIKKLYTQPLHYLTNIILKR--------------LDNII---------------HRQASSHFHLANLWKMDPLYNNFVDSIFP- : UniRef90_G7K3Q4
UniRef90_M1D5N7 : --------------------------------------MKELYGQPLHYLTNLSMKQWDYLRIGANDEDVPLDTLIDPAKAESSIWRVEEMHRNTISPFFIARLWHGDPMYHVYIDAIFPE : UniRef90_M1D5N7
UniRef90_M1B2U0 : --VLRRARMYQEYMKVVPMPTQRGFAIPFTSWVGFAASMKEFYGQPRHYLTNAQMKKFDHMRLGADNEDVPLDTII--------------------------------------------- : UniRef90_M1B2U0
UniRef90_UPI00042B45FA : --VMKDAKEYQEYMKQLPVPDSSSLVLPFITWQGLAESMKHKYEQPLHYLTHILLRQWDESRDSTKNNEKPIGNVIHPTPIYSAMNEMENNHQR--------------------------- : UniRef90_UPI00042B45FA
UniRef90_K4CVM1 : ---------------------RKESLIPCNSWIGLAASIKGLYGQLLHYLTNLSIKKWNSLRIGASDEDVPLDTLIDPAKAEASIWLIEEMHIYTTSLFF--------------------- : UniRef90_K4CVM1
UniRef90_W5DGC8 : ----------------------------------------------------------DQQRVGSDNEHQPLDAIIHPMKAQALIWATEEVHRLTMSSDHLEKLWAKDPMYHANIDPVFP- : UniRef90_W5DGC8
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111------- :
OrigSeq : GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE : OrigSeq
Jnet : --HHHHHHHHHHHHH----------EEEEEHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH---HHHHHHHHH--------------- : Jnet
jhmm : -HHHHHHHHHHHHHH----------EEEEE-HHHHHHHHHHHH--HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH---HHHHHHHH-------HH------- : jhmm
jpssm : --HHHHHHHHHHHHH----------EEEEHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH---HHHHHHHHH---HH---------- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --BB--B--B--BB--B-BB------BBBBBB-BBB-BB--BB-BBBBBBBBBBB--B----B-B-----BB--BB-BB-BBBBBB-BB-BB--B-B-BBBB-BBB-B--BB-BB--BB-- : Jnet_25
Jnet_5 : ------B-------------------BBBBBB--BB--B-------B---B---B--B-------------B--B-----B---B--B------------BB-BB---------B------ : Jnet_5
Jnet_0 : ----------------------------------------------------------------------------------------------------B--B----------------- : Jnet_0
Jnet Rel : 8069999999999851678878874365321799999999985243379999999987424777777752255557764179999999999860686689999871154300015777899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.