SILENT_MODE BLOCK_FILE jp_YCTB_Nb.concise.blc MAX_NSEQ 866 MAX_INPUT_LEN 868 OUTPUT_FILE jp_YCTB_Nb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 117 855 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 856 117 865 H SPACE SUB_CHARS 1 856 117 865 E SPACE SUB_CHARS 1 856 117 865 - SPACE HELIX 3 859 16 COLOUR_TEXT_REGION 3 859 16 859 50 HELIX 18 859 31 COLOUR_TEXT_REGION 18 859 31 859 50 HELIX 39 859 52 COLOUR_TEXT_REGION 39 859 52 859 50 HELIX 57 859 68 COLOUR_TEXT_REGION 57 859 68 859 50 HELIX 73 859 87 COLOUR_TEXT_REGION 73 859 87 859 50 HELIX 91 859 109 COLOUR_TEXT_REGION 91 859 109 859 50 HELIX 3 864 16 COLOUR_TEXT_REGION 3 864 16 864 50 HELIX 18 864 31 COLOUR_TEXT_REGION 18 864 31 864 50 HELIX 39 864 53 COLOUR_TEXT_REGION 39 864 53 864 50 HELIX 57 864 68 COLOUR_TEXT_REGION 57 864 68 864 50 HELIX 73 864 87 COLOUR_TEXT_REGION 73 864 87 864 50 HELIX 91 864 108 COLOUR_TEXT_REGION 91 864 108 864 50 HELIX 3 865 15 COLOUR_TEXT_REGION 3 865 15 865 50 HELIX 18 865 32 COLOUR_TEXT_REGION 18 865 32 865 50 HELIX 39 865 52 COLOUR_TEXT_REGION 39 865 52 865 50 HELIX 56 865 68 COLOUR_TEXT_REGION 56 865 68 865 50 HELIX 73 865 86 COLOUR_TEXT_REGION 73 865 86 865 50 HELIX 92 865 109 COLOUR_TEXT_REGION 92 865 109 865 50