SILENT_MODE BLOCK_FILE jp_2dA_XYC.concise.blc MAX_NSEQ 284 MAX_INPUT_LEN 286 OUTPUT_FILE jp_2dA_XYC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 273 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 274 101 283 H SPACE SUB_CHARS 1 274 101 283 E SPACE SUB_CHARS 1 274 101 283 - SPACE STRAND 9 277 14 COLOUR_TEXT_REGION 9 277 14 277 51 STRAND 22 277 29 COLOUR_TEXT_REGION 22 277 29 277 51 STRAND 35 277 40 COLOUR_TEXT_REGION 35 277 40 277 51 STRAND 69 277 73 COLOUR_TEXT_REGION 69 277 73 277 51 STRAND 82 277 88 COLOUR_TEXT_REGION 82 277 88 277 51 HELIX 49 277 53 COLOUR_TEXT_REGION 49 277 53 277 50 HELIX 57 277 63 COLOUR_TEXT_REGION 57 277 63 277 50 HELIX 92 277 99 COLOUR_TEXT_REGION 92 277 99 277 50 STRAND 9 282 14 COLOUR_TEXT_REGION 9 282 14 282 51 STRAND 22 282 29 COLOUR_TEXT_REGION 22 282 29 282 51 STRAND 35 282 40 COLOUR_TEXT_REGION 35 282 40 282 51 STRAND 69 282 73 COLOUR_TEXT_REGION 69 282 73 282 51 STRAND 82 282 88 COLOUR_TEXT_REGION 82 282 88 282 51 HELIX 49 282 53 COLOUR_TEXT_REGION 49 282 53 282 50 HELIX 58 282 63 COLOUR_TEXT_REGION 58 282 63 282 50 HELIX 92 282 99 COLOUR_TEXT_REGION 92 282 99 282 50 STRAND 9 283 14 COLOUR_TEXT_REGION 9 283 14 283 51 STRAND 21 283 29 COLOUR_TEXT_REGION 21 283 29 283 51 STRAND 35 283 40 COLOUR_TEXT_REGION 35 283 40 283 51 STRAND 69 283 73 COLOUR_TEXT_REGION 69 283 73 283 51 STRAND 81 283 88 COLOUR_TEXT_REGION 81 283 88 283 51 HELIX 48 283 53 COLOUR_TEXT_REGION 48 283 53 283 50 HELIX 57 283 63 COLOUR_TEXT_REGION 57 283 63 283 50 HELIX 92 283 98 COLOUR_TEXT_REGION 92 283 98 283 50