SILENT_MODE BLOCK_FILE jp_bgsTok_.concise.blc MAX_NSEQ 329 MAX_INPUT_LEN 331 OUTPUT_FILE jp_bgsTok_.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 82 318 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 319 82 328 H SPACE SUB_CHARS 1 319 82 328 E SPACE SUB_CHARS 1 319 82 328 - SPACE STRAND 4 322 10 COLOUR_TEXT_REGION 4 322 10 322 51 STRAND 34 322 41 COLOUR_TEXT_REGION 34 322 41 322 51 STRAND 46 322 53 COLOUR_TEXT_REGION 46 322 53 322 51 STRAND 63 322 65 COLOUR_TEXT_REGION 63 322 65 322 51 STRAND 71 322 74 COLOUR_TEXT_REGION 71 322 74 322 51 HELIX 20 322 25 COLOUR_TEXT_REGION 20 322 25 322 50 STRAND 4 327 10 COLOUR_TEXT_REGION 4 327 10 327 51 STRAND 36 327 40 COLOUR_TEXT_REGION 36 327 40 327 51 STRAND 47 327 53 COLOUR_TEXT_REGION 47 327 53 327 51 STRAND 63 327 65 COLOUR_TEXT_REGION 63 327 65 327 51 STRAND 71 327 74 COLOUR_TEXT_REGION 71 327 74 327 51 HELIX 20 327 25 COLOUR_TEXT_REGION 20 327 25 327 50 HELIX 33 327 35 COLOUR_TEXT_REGION 33 327 35 327 50 STRAND 4 328 11 COLOUR_TEXT_REGION 4 328 11 328 51 STRAND 34 328 41 COLOUR_TEXT_REGION 34 328 41 328 51 STRAND 46 328 53 COLOUR_TEXT_REGION 46 328 53 328 51 STRAND 62 328 65 COLOUR_TEXT_REGION 62 328 65 328 51 STRAND 71 328 74 COLOUR_TEXT_REGION 71 328 74 328 51 HELIX 20 328 26 COLOUR_TEXT_REGION 20 328 26 328 50