SILENT_MODE BLOCK_FILE jp_CGmQKYB.concise.blc MAX_NSEQ 920 MAX_INPUT_LEN 922 OUTPUT_FILE jp_CGmQKYB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 241 909 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 910 241 919 H SPACE SUB_CHARS 1 910 241 919 E SPACE SUB_CHARS 1 910 241 919 - SPACE STRAND 19 913 21 COLOUR_TEXT_REGION 19 913 21 913 51 STRAND 26 913 31 COLOUR_TEXT_REGION 26 913 31 913 51 STRAND 55 913 61 COLOUR_TEXT_REGION 55 913 61 913 51 STRAND 67 913 74 COLOUR_TEXT_REGION 67 913 74 913 51 STRAND 80 913 84 COLOUR_TEXT_REGION 80 913 84 913 51 STRAND 106 913 108 COLOUR_TEXT_REGION 106 913 108 913 51 STRAND 113 913 119 COLOUR_TEXT_REGION 113 913 119 913 51 STRAND 142 913 142 COLOUR_TEXT_REGION 142 913 142 913 51 STRAND 147 913 152 COLOUR_TEXT_REGION 147 913 152 913 51 STRAND 159 913 163 COLOUR_TEXT_REGION 159 913 163 913 51 HELIX 6 913 15 COLOUR_TEXT_REGION 6 913 15 913 50 HELIX 35 913 43 COLOUR_TEXT_REGION 35 913 43 913 50 HELIX 89 913 100 COLOUR_TEXT_REGION 89 913 100 913 50 HELIX 124 913 129 COLOUR_TEXT_REGION 124 913 129 913 50 HELIX 168 913 177 COLOUR_TEXT_REGION 168 913 177 913 50 HELIX 183 913 197 COLOUR_TEXT_REGION 183 913 197 913 50 HELIX 229 913 238 COLOUR_TEXT_REGION 229 913 238 913 50 STRAND 19 918 21 COLOUR_TEXT_REGION 19 918 21 918 51 STRAND 26 918 32 COLOUR_TEXT_REGION 26 918 32 918 51 STRAND 55 918 61 COLOUR_TEXT_REGION 55 918 61 918 51 STRAND 67 918 75 COLOUR_TEXT_REGION 67 918 75 918 51 STRAND 80 918 84 COLOUR_TEXT_REGION 80 918 84 918 51 STRAND 106 918 108 COLOUR_TEXT_REGION 106 918 108 918 51 STRAND 113 918 119 COLOUR_TEXT_REGION 113 918 119 918 51 STRAND 147 918 151 COLOUR_TEXT_REGION 147 918 151 918 51 STRAND 159 918 163 COLOUR_TEXT_REGION 159 918 163 918 51 HELIX 6 918 15 COLOUR_TEXT_REGION 6 918 15 918 50 HELIX 35 918 43 COLOUR_TEXT_REGION 35 918 43 918 50 HELIX 89 918 99 COLOUR_TEXT_REGION 89 918 99 918 50 HELIX 123 918 130 COLOUR_TEXT_REGION 123 918 130 918 50 HELIX 167 918 178 COLOUR_TEXT_REGION 167 918 178 918 50 HELIX 184 918 197 COLOUR_TEXT_REGION 184 918 197 918 50 HELIX 209 918 211 COLOUR_TEXT_REGION 209 918 211 918 50 HELIX 229 918 239 COLOUR_TEXT_REGION 229 918 239 918 50 STRAND 19 919 21 COLOUR_TEXT_REGION 19 919 21 919 51 STRAND 26 919 31 COLOUR_TEXT_REGION 26 919 31 919 51 STRAND 55 919 61 COLOUR_TEXT_REGION 55 919 61 919 51 STRAND 67 919 73 COLOUR_TEXT_REGION 67 919 73 919 51 STRAND 80 919 84 COLOUR_TEXT_REGION 80 919 84 919 51 STRAND 106 919 107 COLOUR_TEXT_REGION 106 919 107 919 51 STRAND 112 919 119 COLOUR_TEXT_REGION 112 919 119 919 51 STRAND 140 919 143 COLOUR_TEXT_REGION 140 919 143 919 51 STRAND 148 919 152 COLOUR_TEXT_REGION 148 919 152 919 51 STRAND 159 919 162 COLOUR_TEXT_REGION 159 919 162 919 51 HELIX 7 919 14 COLOUR_TEXT_REGION 7 919 14 919 50 HELIX 35 919 44 COLOUR_TEXT_REGION 35 919 44 919 50 HELIX 89 919 100 COLOUR_TEXT_REGION 89 919 100 919 50 HELIX 126 919 128 COLOUR_TEXT_REGION 126 919 128 919 50 HELIX 168 919 176 COLOUR_TEXT_REGION 168 919 176 919 50 HELIX 181 919 194 COLOUR_TEXT_REGION 181 919 194 919 50 HELIX 197 919 199 COLOUR_TEXT_REGION 197 919 199 919 50 HELIX 229 919 238 COLOUR_TEXT_REGION 229 919 238 919 50