SILENT_MODE
BLOCK_FILE jp_LUF2A_u.concise.blc
MAX_NSEQ 697
MAX_INPUT_LEN 699
OUTPUT_FILE jp_LUF2A_u.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 107 686   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 687 107 696 H SPACE
SUB_CHARS 1 687 107 696 E SPACE
SUB_CHARS 1 687 107 696 - SPACE
STRAND 5 690 11
COLOUR_TEXT_REGION 5 690 11 690 51
STRAND 38 690 43
COLOUR_TEXT_REGION 38 690 43 690 51
STRAND 59 690 68
COLOUR_TEXT_REGION 59 690 68 690 51
STRAND 88 690 94
COLOUR_TEXT_REGION 88 690 94 690 51
HELIX 17 690 33
COLOUR_TEXT_REGION 17 690 33 690 50
HELIX 73 690 81
COLOUR_TEXT_REGION 73 690 81 690 50
HELIX 102 690 105
COLOUR_TEXT_REGION 102 690 105 690 50
STRAND 5 695 11
COLOUR_TEXT_REGION 5 695 11 695 51
STRAND 38 695 43
COLOUR_TEXT_REGION 38 695 43 695 51
STRAND 58 695 68
COLOUR_TEXT_REGION 58 695 68 695 51
STRAND 88 695 94
COLOUR_TEXT_REGION 88 695 94 695 51
HELIX 17 695 33
COLOUR_TEXT_REGION 17 695 33 695 50
HELIX 73 695 81
COLOUR_TEXT_REGION 73 695 81 695 50
HELIX 104 695 104
COLOUR_TEXT_REGION 104 695 104 695 50
STRAND 5 696 11
COLOUR_TEXT_REGION 5 696 11 696 51
STRAND 38 696 42
COLOUR_TEXT_REGION 38 696 42 696 51
STRAND 59 696 68
COLOUR_TEXT_REGION 59 696 68 696 51
STRAND 89 696 94
COLOUR_TEXT_REGION 89 696 94 696 51
HELIX 17 696 33
COLOUR_TEXT_REGION 17 696 33 696 50
HELIX 53 696 53
COLOUR_TEXT_REGION 53 696 53 696 50
HELIX 73 696 81
COLOUR_TEXT_REGION 73 696 81 696 50
HELIX 87 696 88
COLOUR_TEXT_REGION 87 696 88 696 50
HELIX 99 696 105
COLOUR_TEXT_REGION 99 696 105 696 50