SILENT_MODE BLOCK_FILE jp_Q4adxDD.concise.blc MAX_NSEQ 959 MAX_INPUT_LEN 961 OUTPUT_FILE jp_Q4adxDD.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 128 948 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 949 128 958 H SPACE SUB_CHARS 1 949 128 958 E SPACE SUB_CHARS 1 949 128 958 - SPACE STRAND 2 952 6 COLOUR_TEXT_REGION 2 952 6 952 51 STRAND 12 952 15 COLOUR_TEXT_REGION 12 952 15 952 51 STRAND 33 952 38 COLOUR_TEXT_REGION 33 952 38 952 51 STRAND 44 952 48 COLOUR_TEXT_REGION 44 952 48 952 51 STRAND 86 952 87 COLOUR_TEXT_REGION 86 952 87 952 51 STRAND 93 952 98 COLOUR_TEXT_REGION 93 952 98 952 51 STRAND 101 952 102 COLOUR_TEXT_REGION 101 952 102 952 51 STRAND 109 952 114 COLOUR_TEXT_REGION 109 952 114 952 51 STRAND 121 952 127 COLOUR_TEXT_REGION 121 952 127 952 51 HELIX 17 952 26 COLOUR_TEXT_REGION 17 952 26 952 50 HELIX 55 952 66 COLOUR_TEXT_REGION 55 952 66 952 50 STRAND 2 957 6 COLOUR_TEXT_REGION 2 957 6 957 51 STRAND 12 957 15 COLOUR_TEXT_REGION 12 957 15 957 51 STRAND 33 957 38 COLOUR_TEXT_REGION 33 957 38 957 51 STRAND 44 957 49 COLOUR_TEXT_REGION 44 957 49 957 51 STRAND 87 957 89 COLOUR_TEXT_REGION 87 957 89 957 51 STRAND 93 957 98 COLOUR_TEXT_REGION 93 957 98 957 51 STRAND 101 957 102 COLOUR_TEXT_REGION 101 957 102 957 51 STRAND 109 957 114 COLOUR_TEXT_REGION 109 957 114 957 51 STRAND 121 957 126 COLOUR_TEXT_REGION 121 957 126 957 51 HELIX 16 957 16 COLOUR_TEXT_REGION 16 957 16 957 50 HELIX 18 957 26 COLOUR_TEXT_REGION 18 957 26 957 50 HELIX 55 957 66 COLOUR_TEXT_REGION 55 957 66 957 50 HELIX 81 957 86 COLOUR_TEXT_REGION 81 957 86 957 50 STRAND 2 958 6 COLOUR_TEXT_REGION 2 958 6 958 51 STRAND 12 958 16 COLOUR_TEXT_REGION 12 958 16 958 51 STRAND 32 958 38 COLOUR_TEXT_REGION 32 958 38 958 51 STRAND 44 958 47 COLOUR_TEXT_REGION 44 958 47 958 51 STRAND 92 958 98 COLOUR_TEXT_REGION 92 958 98 958 51 STRAND 101 958 102 COLOUR_TEXT_REGION 101 958 102 958 51 STRAND 110 958 115 COLOUR_TEXT_REGION 110 958 115 958 51 STRAND 120 958 127 COLOUR_TEXT_REGION 120 958 127 958 51 HELIX 17 958 26 COLOUR_TEXT_REGION 17 958 26 958 50 HELIX 54 958 65 COLOUR_TEXT_REGION 54 958 65 958 50