SILENT_MODE BLOCK_FILE jp_0j_TYS5.concise.blc MAX_NSEQ 996 MAX_INPUT_LEN 998 OUTPUT_FILE jp_0j_TYS5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 260 985 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 986 260 995 H SPACE SUB_CHARS 1 986 260 995 E SPACE SUB_CHARS 1 986 260 995 - SPACE STRAND 3 989 6 COLOUR_TEXT_REGION 3 989 6 989 51 STRAND 41 989 44 COLOUR_TEXT_REGION 41 989 44 989 51 STRAND 69 989 74 COLOUR_TEXT_REGION 69 989 74 989 51 STRAND 78 989 79 COLOUR_TEXT_REGION 78 989 79 989 51 STRAND 110 989 115 COLOUR_TEXT_REGION 110 989 115 989 51 STRAND 141 989 145 COLOUR_TEXT_REGION 141 989 145 989 51 STRAND 166 989 169 COLOUR_TEXT_REGION 166 989 169 989 51 STRAND 189 989 192 COLOUR_TEXT_REGION 189 989 192 989 51 STRAND 235 989 239 COLOUR_TEXT_REGION 235 989 239 989 51 HELIX 29 989 35 COLOUR_TEXT_REGION 29 989 35 989 50 HELIX 54 989 63 COLOUR_TEXT_REGION 54 989 63 989 50 HELIX 90 989 105 COLOUR_TEXT_REGION 90 989 105 989 50 HELIX 124 989 134 COLOUR_TEXT_REGION 124 989 134 989 50 HELIX 153 989 161 COLOUR_TEXT_REGION 153 989 161 989 50 HELIX 215 989 230 COLOUR_TEXT_REGION 215 989 230 989 50 HELIX 247 989 258 COLOUR_TEXT_REGION 247 989 258 989 50 STRAND 2 994 6 COLOUR_TEXT_REGION 2 994 6 994 51 STRAND 41 994 44 COLOUR_TEXT_REGION 41 994 44 994 51 STRAND 69 994 74 COLOUR_TEXT_REGION 69 994 74 994 51 STRAND 77 994 79 COLOUR_TEXT_REGION 77 994 79 994 51 STRAND 110 994 115 COLOUR_TEXT_REGION 110 994 115 994 51 STRAND 141 994 145 COLOUR_TEXT_REGION 141 994 145 994 51 STRAND 166 994 169 COLOUR_TEXT_REGION 166 994 169 994 51 STRAND 188 994 193 COLOUR_TEXT_REGION 188 994 193 994 51 STRAND 235 994 239 COLOUR_TEXT_REGION 235 994 239 994 51 HELIX 33 994 33 COLOUR_TEXT_REGION 33 994 33 994 50 HELIX 54 994 63 COLOUR_TEXT_REGION 54 994 63 994 50 HELIX 90 994 105 COLOUR_TEXT_REGION 90 994 105 994 50 HELIX 124 994 133 COLOUR_TEXT_REGION 124 994 133 994 50 HELIX 153 994 161 COLOUR_TEXT_REGION 153 994 161 994 50 HELIX 215 994 230 COLOUR_TEXT_REGION 215 994 230 994 50 HELIX 247 994 258 COLOUR_TEXT_REGION 247 994 258 994 50 STRAND 3 995 6 COLOUR_TEXT_REGION 3 995 6 995 51 STRAND 41 995 44 COLOUR_TEXT_REGION 41 995 44 995 51 STRAND 69 995 74 COLOUR_TEXT_REGION 69 995 74 995 51 STRAND 110 995 115 COLOUR_TEXT_REGION 110 995 115 995 51 STRAND 141 995 145 COLOUR_TEXT_REGION 141 995 145 995 51 STRAND 165 995 169 COLOUR_TEXT_REGION 165 995 169 995 51 STRAND 181 995 182 COLOUR_TEXT_REGION 181 995 182 995 51 STRAND 190 995 191 COLOUR_TEXT_REGION 190 995 191 995 51 STRAND 235 995 239 COLOUR_TEXT_REGION 235 995 239 995 51 HELIX 29 995 36 COLOUR_TEXT_REGION 29 995 36 995 50 HELIX 54 995 63 COLOUR_TEXT_REGION 54 995 63 995 50 HELIX 90 995 105 COLOUR_TEXT_REGION 90 995 105 995 50 HELIX 124 995 135 COLOUR_TEXT_REGION 124 995 135 995 50 HELIX 153 995 161 COLOUR_TEXT_REGION 153 995 161 995 50 HELIX 215 995 229 COLOUR_TEXT_REGION 215 995 229 995 50 HELIX 247 995 258 COLOUR_TEXT_REGION 247 995 258 995 50