SILENT_MODE BLOCK_FILE jp_fbhaduE.concise.blc MAX_NSEQ 199 MAX_INPUT_LEN 201 OUTPUT_FILE jp_fbhaduE.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 56 188 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 189 56 198 H SPACE SUB_CHARS 1 189 56 198 E SPACE SUB_CHARS 1 189 56 198 - SPACE STRAND 16 192 21 COLOUR_TEXT_REGION 16 192 21 192 51 HELIX 6 192 9 COLOUR_TEXT_REGION 6 192 9 192 50 HELIX 49 192 53 COLOUR_TEXT_REGION 49 192 53 192 50 STRAND 16 197 21 COLOUR_TEXT_REGION 16 197 21 197 51 HELIX 5 197 8 COLOUR_TEXT_REGION 5 197 8 197 50 HELIX 49 197 53 COLOUR_TEXT_REGION 49 197 53 197 50 STRAND 16 198 21 COLOUR_TEXT_REGION 16 198 21 198 51 STRAND 33 198 34 COLOUR_TEXT_REGION 33 198 34 198 51 HELIX 7 198 11 COLOUR_TEXT_REGION 7 198 11 198 50 HELIX 50 198 53 COLOUR_TEXT_REGION 50 198 53 198 50