Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V 1 G 0 -2 0 -1 -2 -1 -1 4 -2 -4 -4 -1 -3 -3 -2 4 0 -4 -3 -3 0 0 0 0 0 0 0 34 0 0 0 0 0 0 0 66 0 0 0 0 0.67 0.23 2 K -2 1 1 1 -4 4 1 -2 4 -4 -3 4 -2 -4 -2 -1 -1 -4 -2 -3 0 0 8 7 0 33 0 0 13 0 0 40 0 0 0 0 0 0 0 0 0.58 0.24 3 K -2 1 0 -2 -4 0 0 -3 -2 -3 -2 6 -2 -4 -2 -1 -2 -4 -3 -3 0 0 4 0 0 0 0 0 0 0 5 92 0 0 0 0 0 0 0 0 0.92 0.35 4 S -1 -2 -1 -2 -2 -2 -2 -2 -3 -3 -3 -2 0 -3 3 4 4 -4 -3 -2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 17 37 42 0 0 0 0.68 0.36 5 K -1 -1 -2 -3 -3 -1 -2 -3 -2 -2 0 4 -1 5 -3 0 -2 -2 0 -2 5 0 0 0 0 0 0 0 0 0 9 39 0 41 0 6 0 0 0 0 0.53 0.36 6 A 2 5 -2 -3 -3 -1 -2 3 -2 -2 -3 0 -3 -4 -3 -1 -2 -4 -3 -3 24 39 0 0 0 0 0 30 0 2 0 3 0 0 0 2 0 0 0 0 0.60 0.36 7 T -2 0 -2 -3 -3 3 -1 -3 -2 3 0 2 2 -3 -3 -1 2 -4 -3 0 0 3 0 0 0 22 0 0 0 26 3 18 8 0 0 2 14 0 0 3 0.32 0.36 8 K -2 1 -1 -2 -4 0 0 -3 -2 -4 -4 7 -2 -4 -2 -1 -2 -4 -3 -3 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 1.06 0.34 9 K -2 3 -2 -2 -3 3 -1 -1 -2 0 0 3 0 -3 -3 -2 -1 -4 -3 0 0 22 0 0 0 16 0 5 0 8 8 28 3 0 0 0 2 0 0 8 0.35 0.34 10 R -2 6 -2 -3 -4 -1 -1 -3 0 -2 -1 2 -2 3 -3 -2 0 -3 -1 -3 0 60 0 0 0 0 0 0 3 2 3 9 0 18 0 0 5 0 0 0 0.68 0.33 11 L -3 -3 -5 -5 -2 -3 -4 -5 -4 1 5 -4 1 0 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0.92 0.33 12 A 5 -3 -1 -3 -2 -2 -2 0 -3 -1 -2 -2 1 -3 0 0 -1 -4 -3 -1 76 0 3 0 0 0 0 6 0 3 0 0 5 0 3 3 0 0 0 2 0.58 0.33 13 K -2 2 -1 -2 -4 0 1 -3 -2 -4 -4 6 -2 -4 -2 -1 -2 -4 -3 -3 0 5 0 0 0 0 3 0 0 0 0 92 0 0 0 0 0 0 0 0 0.98 0.33 14 L 4 -1 -2 -3 -2 -1 -1 -2 -2 -2 1 3 -1 -2 -2 -1 -1 -3 -1 -1 47 0 0 0 0 0 0 0 0 0 18 32 0 0 0 0 0 0 3 0 0.39 0.33 15 D 0 0 0 1 0 3 2 -3 4 -1 0 -1 0 -3 -3 -1 -2 -4 -2 -2 12 4 3 10 3 22 18 0 12 3 12 0 2 0 0 0 0 0 0 0 0.30 0.32 16 N -2 4 2 -1 -4 0 0 -3 -1 -4 -4 5 -2 -4 -2 -1 -2 -4 -3 -3 0 29 10 0 0 0 3 0 0 0 0 58 0 0 0 0 0 0 0 0 0.79 0.32 17 Q -1 0 -1 -1 -4 7 1 -3 -1 -4 -3 0 -1 -4 -2 1 0 -3 -2 -3 0 0 0 0 0 84 4 0 0 0 0 0 0 0 0 8 4 0 0 0 0.99 0.32 18 N -3 -1 7 1 -4 -1 -1 -1 0 -4 -5 -1 -3 -4 -3 0 -1 -5 -3 -4 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.31 0.32 19 S -1 5 -1 -2 -1 0 -1 -3 4 -4 -3 0 -2 -3 -3 2 0 -4 -2 -3 0 53 0 0 2 2 0 0 14 0 0 0 0 0 0 27 3 0 0 0 0.67 0.32 20 R 0 5 -2 -2 -4 -1 -1 -3 -2 -4 -4 0 -3 -4 6 0 -2 -4 -3 -3 6 45 0 0 0 0 0 0 0 0 0 0 0 0 44 5 0 0 0 0 1.09 0.32 21 V -2 -4 -4 -4 -2 -3 -4 -4 -4 4 1 -3 1 -1 -4 -3 0 -4 -2 4 0 0 0 0 0 0 0 0 0 36 9 0 3 0 0 0 3 0 0 49 0.63 0.32 22 P -2 -3 -3 -2 -4 -2 -2 -3 -3 -4 -4 -2 -4 -5 8 -2 -2 -5 -4 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.40 0.32 23 A 3 -1 0 -2 -2 4 -1 -2 1 -1 -1 -1 -1 -3 -2 0 1 -3 -2 -1 37 0 6 0 0 30 0 0 5 2 3 0 0 0 0 0 12 0 0 4 0.37 0.32 24 W -4 -4 -5 -5 -3 -3 -4 -4 -3 -4 -3 -4 -2 0 -5 -4 -4 12 1 -4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3.05 0.32 25 V -1 -4 -4 -4 -2 -3 -4 -4 -4 4 0 -3 0 2 -4 -3 -1 -3 -1 5 3 0 0 0 0 0 0 0 0 31 0 0 0 10 0 0 0 0 0 56 0.63 0.32 26 M -2 4 -2 -3 -3 1 -2 -4 -2 3 0 0 5 -2 -3 -2 -2 -3 -2 0 0 37 0 0 0 7 0 0 0 26 0 0 27 0 0 0 0 0 0 2 0.51 0.32 27 L -2 -3 -4 -4 -2 -2 -4 -4 -3 3 3 -3 6 0 -4 -3 -2 -2 1 0 0 0 0 0 0 0 0 0 0 22 27 0 46 0 0 0 0 0 6 0 0.67 0.32 28 K -2 3 -1 -2 -4 0 0 -3 -2 -4 -3 6 -2 -4 -2 -1 -2 -4 -3 -3 0 17 0 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 0 0.94 0.32 29 T 0 -2 -1 -2 -2 -2 -2 -2 -3 -2 -2 -2 -2 -3 -2 1 6 -4 -3 -1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 92 0 0 0 0.89 0.32 30 D -2 -2 4 5 -4 -1 -1 3 -2 -4 -5 -2 -4 -4 -3 0 -2 -5 -4 -4 0 0 32 39 0 0 0 27 0 0 0 0 0 0 0 3 0 0 0 0 0.81 0.32 31 R -2 6 0 -2 -4 1 -1 -3 -1 -3 -2 1 3 -3 -3 -1 -2 -4 -3 -3 0 76 3 0 0 2 0 0 0 0 0 2 12 0 0 4 0 0 0 0 0.90 0.32 32 R -2 4 -2 -3 -4 -1 -1 -3 0 -1 -2 2 -2 1 -3 -1 -1 -1 6 -2 0 30 0 0 0 0 3 0 0 4 2 17 0 2 0 3 2 0 37 0 0.57 0.32 33 N -3 -1 7 1 -4 -1 -1 -2 5 -4 -4 -1 -3 -4 -3 -1 -1 -5 -2 -4 0 0 71 5 0 0 0 0 23 0 0 0 0 0 0 0 0 0 0 0 1.04 0.32 34 H 2 -3 -2 -2 -3 -2 -2 -2 0 -3 -3 -2 -1 -4 6 2 -1 -4 -3 -3 21 0 0 0 0 0 0 0 3 0 0 0 2 0 50 23 0 0 0 0 1.03 0.32 35 K -2 1 -1 -2 -4 0 0 -3 -2 -3 -2 6 -2 -4 -2 -1 0 -4 -3 -3 0 0 0 0 0 0 0 0 0 0 4 93 0 0 0 0 4 0 0 0 0.89 0.32 36 R -2 7 -1 -3 -5 0 -1 -3 -1 -4 -3 1 -2 -4 -3 -2 -2 -4 -3 -4 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.30 0.32 37 R -2 7 -1 -3 -5 0 -1 -3 -1 -4 -3 2 -2 -4 -3 -2 -2 -4 -3 -4 0 97 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1.26 0.32 38 H -2 -1 5 -1 -4 0 -1 -2 7 -4 -4 -1 -3 -3 -3 1 -1 -4 -1 -4 0 0 42 0 0 4 0 0 45 0 0 0 0 0 0 9 0 0 0 0 0.95 0.32 39 W -4 -4 -5 -5 -3 -3 -4 -4 -3 -4 -3 -4 -2 0 -5 -4 -4 12 1 -4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3.05 0.32 40 R -2 7 -1 -3 -5 0 -1 -3 -1 -4 -3 1 -2 -4 -3 -2 -2 -4 -3 -4 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.30 0.32 41 R -2 7 -1 -3 -5 0 -1 -3 1 -4 -3 2 -2 -4 -3 -2 -2 -4 -2 -4 0 94 0 0 0 0 0 0 4 0 0 3 0 0 0 0 0 0 0 0 1.21 0.32 42 N -1 -2 4 -1 -2 -1 -2 0 -2 -3 -3 -1 -2 -4 -2 2 4 -4 -3 -2 0 0 29 0 0 0 0 4 0 0 0 0 0 0 0 20 47 0 0 0 0.63 0.33 43 D -2 1 1 4 -4 0 0 -2 -2 -4 -4 4 -3 -4 -2 2 -1 -4 -3 -4 0 3 4 35 0 0 0 0 0 0 0 42 0 0 0 17 0 0 0 0 0.63 0.33 44 T -2 -3 -3 -4 -2 -3 -3 -4 -4 1 5 -3 1 -1 -3 -2 2 -3 -2 0 0 0 0 0 0 0 0 0 0 2 75 0 0 0 0 0 22 0 0 0 0.64 0.32 45 D -2 0 2 5 -4 0 0 -2 -2 -4 -4 4 -3 -4 0 -1 -2 -5 -3 -4 0 0 10 49 0 0 0 0 0 0 0 37 0 0 3 0 0 0 0 0 0.73 0.26 46 E -1 0 -1 1 -4 2 6 -3 0 -4 -3 0 -3 -4 -2 -1 -1 -3 -3 -3 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0.91 0.12 K Lambda Standard Ungapped 0.1255 0.3148 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1670 0.3171 PSI Gapped 0.0511 0.2670