SILENT_MODE BLOCK_FILE jp_j23a2dJ.concise.blc MAX_NSEQ 875 MAX_INPUT_LEN 877 OUTPUT_FILE jp_j23a2dJ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 145 864 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 865 145 874 H SPACE SUB_CHARS 1 865 145 874 E SPACE SUB_CHARS 1 865 145 874 - SPACE STRAND 6 868 12 COLOUR_TEXT_REGION 6 868 12 868 51 STRAND 20 868 23 COLOUR_TEXT_REGION 20 868 23 868 51 STRAND 59 868 63 COLOUR_TEXT_REGION 59 868 63 868 51 STRAND 101 868 105 COLOUR_TEXT_REGION 101 868 105 868 51 STRAND 113 868 118 COLOUR_TEXT_REGION 113 868 118 868 51 STRAND 134 868 138 COLOUR_TEXT_REGION 134 868 138 868 51 HELIX 67 868 72 COLOUR_TEXT_REGION 67 868 72 868 50 HELIX 82 868 89 COLOUR_TEXT_REGION 82 868 89 868 50 HELIX 119 868 130 COLOUR_TEXT_REGION 119 868 130 868 50 STRAND 6 873 12 COLOUR_TEXT_REGION 6 873 12 873 51 STRAND 20 873 24 COLOUR_TEXT_REGION 20 873 24 873 51 STRAND 59 873 63 COLOUR_TEXT_REGION 59 873 63 873 51 STRAND 82 873 84 COLOUR_TEXT_REGION 82 873 84 873 51 STRAND 101 873 105 COLOUR_TEXT_REGION 101 873 105 873 51 STRAND 112 873 118 COLOUR_TEXT_REGION 112 873 118 873 51 STRAND 134 873 138 COLOUR_TEXT_REGION 134 873 138 873 51 HELIX 67 873 72 COLOUR_TEXT_REGION 67 873 72 873 50 HELIX 119 873 130 COLOUR_TEXT_REGION 119 873 130 873 50 STRAND 6 874 11 COLOUR_TEXT_REGION 6 874 11 874 51 STRAND 101 874 105 COLOUR_TEXT_REGION 101 874 105 874 51 STRAND 114 874 118 COLOUR_TEXT_REGION 114 874 118 874 51 STRAND 134 874 138 COLOUR_TEXT_REGION 134 874 138 874 51 HELIX 60 874 65 COLOUR_TEXT_REGION 60 874 65 874 50 HELIX 67 874 72 COLOUR_TEXT_REGION 67 874 72 874 50 HELIX 81 874 92 COLOUR_TEXT_REGION 81 874 92 874 50 HELIX 95 874 97 COLOUR_TEXT_REGION 95 874 97 874 50 HELIX 119 874 130 COLOUR_TEXT_REGION 119 874 130 874 50 HELIX 141 874 142 COLOUR_TEXT_REGION 141 874 142 874 50