SILENT_MODE
BLOCK_FILE jp_l7_t7vw.concise.blc
MAX_NSEQ 283
MAX_INPUT_LEN 285
OUTPUT_FILE jp_l7_t7vw.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 143 272   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 273 143 282 H SPACE
SUB_CHARS 1 273 143 282 E SPACE
SUB_CHARS 1 273 143 282 - SPACE
STRAND 21 276 23
COLOUR_TEXT_REGION 21 276 23 276 51
STRAND 49 276 52
COLOUR_TEXT_REGION 49 276 52 276 51
HELIX 4 276 14
COLOUR_TEXT_REGION 4 276 14 276 50
HELIX 27 276 33
COLOUR_TEXT_REGION 27 276 33 276 50
HELIX 37 276 45
COLOUR_TEXT_REGION 37 276 45 276 50
HELIX 59 276 71
COLOUR_TEXT_REGION 59 276 71 276 50
HELIX 91 276 110
COLOUR_TEXT_REGION 91 276 110 276 50
HELIX 116 276 126
COLOUR_TEXT_REGION 116 276 126 276 50
HELIX 131 276 141
COLOUR_TEXT_REGION 131 276 141 276 50
STRAND 21 281 23
COLOUR_TEXT_REGION 21 281 23 281 51
STRAND 49 281 52
COLOUR_TEXT_REGION 49 281 52 281 51
HELIX 4 281 14
COLOUR_TEXT_REGION 4 281 14 281 50
HELIX 27 281 33
COLOUR_TEXT_REGION 27 281 33 281 50
HELIX 37 281 45
COLOUR_TEXT_REGION 37 281 45 281 50
HELIX 59 281 70
COLOUR_TEXT_REGION 59 281 70 281 50
HELIX 91 281 110
COLOUR_TEXT_REGION 91 281 110 281 50
HELIX 116 281 126
COLOUR_TEXT_REGION 116 281 126 281 50
HELIX 131 281 141
COLOUR_TEXT_REGION 131 281 141 281 50
STRAND 21 282 23
COLOUR_TEXT_REGION 21 282 23 282 51
STRAND 48 282 52
COLOUR_TEXT_REGION 48 282 52 282 51
HELIX 4 282 14
COLOUR_TEXT_REGION 4 282 14 282 50
HELIX 26 282 33
COLOUR_TEXT_REGION 26 282 33 282 50
HELIX 38 282 45
COLOUR_TEXT_REGION 38 282 45 282 50
HELIX 60 282 72
COLOUR_TEXT_REGION 60 282 72 282 50
HELIX 90 282 110
COLOUR_TEXT_REGION 90 282 110 282 50
HELIX 116 282 126
COLOUR_TEXT_REGION 116 282 126 282 50
HELIX 131 282 141
COLOUR_TEXT_REGION 131 282 141 282 50