SILENT_MODE BLOCK_FILE jp_iDa8GIy.concise.blc MAX_NSEQ 453 MAX_INPUT_LEN 455 OUTPUT_FILE jp_iDa8GIy.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 82 442 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 443 82 452 H SPACE SUB_CHARS 1 443 82 452 E SPACE SUB_CHARS 1 443 82 452 - SPACE STRAND 3 446 6 COLOUR_TEXT_REGION 3 446 6 446 51 STRAND 11 446 13 COLOUR_TEXT_REGION 11 446 13 446 51 STRAND 42 446 44 COLOUR_TEXT_REGION 42 446 44 446 51 STRAND 63 446 71 COLOUR_TEXT_REGION 63 446 71 446 51 STRAND 76 446 80 COLOUR_TEXT_REGION 76 446 80 446 51 HELIX 20 446 34 COLOUR_TEXT_REGION 20 446 34 446 50 HELIX 47 446 55 COLOUR_TEXT_REGION 47 446 55 446 50 STRAND 2 451 6 COLOUR_TEXT_REGION 2 451 6 451 51 STRAND 11 451 13 COLOUR_TEXT_REGION 11 451 13 451 51 STRAND 42 451 44 COLOUR_TEXT_REGION 42 451 44 451 51 STRAND 64 451 72 COLOUR_TEXT_REGION 64 451 72 451 51 STRAND 76 451 80 COLOUR_TEXT_REGION 76 451 80 451 51 HELIX 20 451 34 COLOUR_TEXT_REGION 20 451 34 451 50 HELIX 46 451 55 COLOUR_TEXT_REGION 46 451 55 451 50 STRAND 3 452 7 COLOUR_TEXT_REGION 3 452 7 452 51 STRAND 11 452 13 COLOUR_TEXT_REGION 11 452 13 452 51 STRAND 42 452 44 COLOUR_TEXT_REGION 42 452 44 452 51 STRAND 63 452 71 COLOUR_TEXT_REGION 63 452 71 452 51 STRAND 77 452 81 COLOUR_TEXT_REGION 77 452 81 452 51 HELIX 21 452 34 COLOUR_TEXT_REGION 21 452 34 452 50 HELIX 49 452 55 COLOUR_TEXT_REGION 49 452 55 452 50