SILENT_MODE
BLOCK_FILE jp_iDa8GIy.concise.blc
MAX_NSEQ 453
MAX_INPUT_LEN 455
OUTPUT_FILE jp_iDa8GIy.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 82 442   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 443 82 452 H SPACE
SUB_CHARS 1 443 82 452 E SPACE
SUB_CHARS 1 443 82 452 - SPACE
STRAND 3 446 6
COLOUR_TEXT_REGION 3 446 6 446 51
STRAND 11 446 13
COLOUR_TEXT_REGION 11 446 13 446 51
STRAND 42 446 44
COLOUR_TEXT_REGION 42 446 44 446 51
STRAND 63 446 71
COLOUR_TEXT_REGION 63 446 71 446 51
STRAND 76 446 80
COLOUR_TEXT_REGION 76 446 80 446 51
HELIX 20 446 34
COLOUR_TEXT_REGION 20 446 34 446 50
HELIX 47 446 55
COLOUR_TEXT_REGION 47 446 55 446 50
STRAND 2 451 6
COLOUR_TEXT_REGION 2 451 6 451 51
STRAND 11 451 13
COLOUR_TEXT_REGION 11 451 13 451 51
STRAND 42 451 44
COLOUR_TEXT_REGION 42 451 44 451 51
STRAND 64 451 72
COLOUR_TEXT_REGION 64 451 72 451 51
STRAND 76 451 80
COLOUR_TEXT_REGION 76 451 80 451 51
HELIX 20 451 34
COLOUR_TEXT_REGION 20 451 34 451 50
HELIX 46 451 55
COLOUR_TEXT_REGION 46 451 55 451 50
STRAND 3 452 7
COLOUR_TEXT_REGION 3 452 7 452 51
STRAND 11 452 13
COLOUR_TEXT_REGION 11 452 13 452 51
STRAND 42 452 44
COLOUR_TEXT_REGION 42 452 44 452 51
STRAND 63 452 71
COLOUR_TEXT_REGION 63 452 71 452 51
STRAND 77 452 81
COLOUR_TEXT_REGION 77 452 81 452 51
HELIX 21 452 34
COLOUR_TEXT_REGION 21 452 34 452 50
HELIX 49 452 55
COLOUR_TEXT_REGION 49 452 55 452 50