SILENT_MODE
BLOCK_FILE jp_tRWQ16J.concise.blc
MAX_NSEQ 442
MAX_INPUT_LEN 444
OUTPUT_FILE jp_tRWQ16J.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 142 431   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 432 142 441 H SPACE
SUB_CHARS 1 432 142 441 E SPACE
SUB_CHARS 1 432 142 441 - SPACE
STRAND 42 435 44
COLOUR_TEXT_REGION 42 435 44 435 51
STRAND 89 435 93
COLOUR_TEXT_REGION 89 435 93 435 51
STRAND 106 435 111
COLOUR_TEXT_REGION 106 435 111 435 51
STRAND 134 435 134
COLOUR_TEXT_REGION 134 435 134 435 51
HELIX 20 435 27
COLOUR_TEXT_REGION 20 435 27 435 50
HELIX 58 435 62
COLOUR_TEXT_REGION 58 435 62 435 50
HELIX 117 435 129
COLOUR_TEXT_REGION 117 435 129 435 50
STRAND 34 440 35
COLOUR_TEXT_REGION 34 440 35 440 51
STRAND 41 440 44
COLOUR_TEXT_REGION 41 440 44 440 51
STRAND 79 440 80
COLOUR_TEXT_REGION 79 440 80 440 51
STRAND 89 440 93
COLOUR_TEXT_REGION 89 440 93 440 51
STRAND 106 440 111
COLOUR_TEXT_REGION 106 440 111 440 51
HELIX 20 440 28
COLOUR_TEXT_REGION 20 440 28 440 50
HELIX 58 440 62
COLOUR_TEXT_REGION 58 440 62 440 50
HELIX 96 440 99
COLOUR_TEXT_REGION 96 440 99 440 50
HELIX 117 440 129
COLOUR_TEXT_REGION 117 440 129 440 50
STRAND 43 441 44
COLOUR_TEXT_REGION 43 441 44 441 51
STRAND 81 441 83
COLOUR_TEXT_REGION 81 441 83 441 51
STRAND 90 441 93
COLOUR_TEXT_REGION 90 441 93 441 51
STRAND 107 441 111
COLOUR_TEXT_REGION 107 441 111 441 51
STRAND 133 441 134
COLOUR_TEXT_REGION 133 441 134 441 51
HELIX 58 441 61
COLOUR_TEXT_REGION 58 441 61 441 50
HELIX 120 441 129
COLOUR_TEXT_REGION 120 441 129 441 50