SILENT_MODE BLOCK_FILE jp_xookypV.concise.blc MAX_NSEQ 652 MAX_INPUT_LEN 654 OUTPUT_FILE jp_xookypV.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 235 641 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 642 235 651 H SPACE SUB_CHARS 1 642 235 651 E SPACE SUB_CHARS 1 642 235 651 - SPACE STRAND 3 645 7 COLOUR_TEXT_REGION 3 645 7 645 51 STRAND 21 645 27 COLOUR_TEXT_REGION 21 645 27 645 51 STRAND 44 645 47 COLOUR_TEXT_REGION 44 645 47 645 51 STRAND 66 645 70 COLOUR_TEXT_REGION 66 645 70 645 51 STRAND 88 645 89 COLOUR_TEXT_REGION 88 645 89 645 51 STRAND 97 645 101 COLOUR_TEXT_REGION 97 645 101 645 51 STRAND 117 645 123 COLOUR_TEXT_REGION 117 645 123 645 51 STRAND 140 645 144 COLOUR_TEXT_REGION 140 645 144 645 51 STRAND 225 645 230 COLOUR_TEXT_REGION 225 645 230 645 51 STRAND 233 645 234 COLOUR_TEXT_REGION 233 645 234 645 51 HELIX 28 645 39 COLOUR_TEXT_REGION 28 645 39 645 50 HELIX 51 645 60 COLOUR_TEXT_REGION 51 645 60 645 50 HELIX 105 645 112 COLOUR_TEXT_REGION 105 645 112 645 50 HELIX 125 645 135 COLOUR_TEXT_REGION 125 645 135 645 50 HELIX 153 645 168 COLOUR_TEXT_REGION 153 645 168 645 50 HELIX 177 645 189 COLOUR_TEXT_REGION 177 645 189 645 50 HELIX 192 645 198 COLOUR_TEXT_REGION 192 645 198 645 50 HELIX 202 645 207 COLOUR_TEXT_REGION 202 645 207 645 50 HELIX 211 645 219 COLOUR_TEXT_REGION 211 645 219 645 50 STRAND 2 650 7 COLOUR_TEXT_REGION 2 650 7 650 51 STRAND 21 650 27 COLOUR_TEXT_REGION 21 650 27 650 51 STRAND 44 650 47 COLOUR_TEXT_REGION 44 650 47 650 51 STRAND 66 650 70 COLOUR_TEXT_REGION 66 650 70 650 51 STRAND 97 650 101 COLOUR_TEXT_REGION 97 650 101 650 51 STRAND 117 650 123 COLOUR_TEXT_REGION 117 650 123 650 51 STRAND 140 650 144 COLOUR_TEXT_REGION 140 650 144 650 51 STRAND 226 650 230 COLOUR_TEXT_REGION 226 650 230 650 51 HELIX 28 650 39 COLOUR_TEXT_REGION 28 650 39 650 50 HELIX 51 650 60 COLOUR_TEXT_REGION 51 650 60 650 50 HELIX 105 650 112 COLOUR_TEXT_REGION 105 650 112 650 50 HELIX 126 650 135 COLOUR_TEXT_REGION 126 650 135 650 50 HELIX 153 650 168 COLOUR_TEXT_REGION 153 650 168 650 50 HELIX 177 650 197 COLOUR_TEXT_REGION 177 650 197 650 50 HELIX 202 650 207 COLOUR_TEXT_REGION 202 650 207 650 50 HELIX 211 650 219 COLOUR_TEXT_REGION 211 650 219 650 50 STRAND 3 651 7 COLOUR_TEXT_REGION 3 651 7 651 51 STRAND 22 651 27 COLOUR_TEXT_REGION 22 651 27 651 51 STRAND 43 651 47 COLOUR_TEXT_REGION 43 651 47 651 51 STRAND 66 651 70 COLOUR_TEXT_REGION 66 651 70 651 51 STRAND 87 651 90 COLOUR_TEXT_REGION 87 651 90 651 51 STRAND 97 651 101 COLOUR_TEXT_REGION 97 651 101 651 51 STRAND 118 651 121 COLOUR_TEXT_REGION 118 651 121 651 51 STRAND 140 651 145 COLOUR_TEXT_REGION 140 651 145 651 51 STRAND 225 651 230 COLOUR_TEXT_REGION 225 651 230 651 51 STRAND 233 651 234 COLOUR_TEXT_REGION 233 651 234 651 51 HELIX 30 651 39 COLOUR_TEXT_REGION 30 651 39 651 50 HELIX 51 651 60 COLOUR_TEXT_REGION 51 651 60 651 50 HELIX 105 651 112 COLOUR_TEXT_REGION 105 651 112 651 50 HELIX 122 651 123 COLOUR_TEXT_REGION 122 651 123 651 50 HELIX 125 651 135 COLOUR_TEXT_REGION 125 651 135 651 50 HELIX 153 651 168 COLOUR_TEXT_REGION 153 651 168 651 50 HELIX 177 651 188 COLOUR_TEXT_REGION 177 651 188 651 50 HELIX 192 651 198 COLOUR_TEXT_REGION 192 651 198 651 50 HELIX 202 651 207 COLOUR_TEXT_REGION 202 651 207 651 50 HELIX 211 651 219 COLOUR_TEXT_REGION 211 651 219 651 50