SILENT_MODE BLOCK_FILE jp_gCv1MFK.concise.blc MAX_NSEQ 1039 MAX_INPUT_LEN 1041 OUTPUT_FILE jp_gCv1MFK.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 103 1028 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1029 103 1038 H SPACE SUB_CHARS 1 1029 103 1038 E SPACE SUB_CHARS 1 1029 103 1038 - SPACE STRAND 0 1032 5 COLOUR_TEXT_REGION 0 1032 5 1032 51 STRAND 13 1032 18 COLOUR_TEXT_REGION 13 1032 18 1032 51 STRAND 20 1032 28 COLOUR_TEXT_REGION 20 1032 28 1032 51 STRAND 76 1032 86 COLOUR_TEXT_REGION 76 1032 86 1032 51 STRAND 92 1032 97 COLOUR_TEXT_REGION 92 1032 97 1032 51 HELIX 34 1032 41 COLOUR_TEXT_REGION 34 1032 41 1032 50 HELIX 47 1032 71 COLOUR_TEXT_REGION 47 1032 71 1032 50 HELIX 91 1032 91 COLOUR_TEXT_REGION 91 1032 91 1032 50 STRAND 0 1037 5 COLOUR_TEXT_REGION 0 1037 5 1037 51 STRAND 13 1037 18 COLOUR_TEXT_REGION 13 1037 18 1037 51 STRAND 20 1037 28 COLOUR_TEXT_REGION 20 1037 28 1037 51 STRAND 77 1037 86 COLOUR_TEXT_REGION 77 1037 86 1037 51 STRAND 92 1037 97 COLOUR_TEXT_REGION 92 1037 97 1037 51 HELIX 32 1037 40 COLOUR_TEXT_REGION 32 1037 40 1037 50 HELIX 47 1037 71 COLOUR_TEXT_REGION 47 1037 71 1037 50 HELIX 91 1037 91 COLOUR_TEXT_REGION 91 1037 91 1037 50 STRAND 2 1038 5 COLOUR_TEXT_REGION 2 1038 5 1038 51 STRAND 12 1038 18 COLOUR_TEXT_REGION 12 1038 18 1038 51 STRAND 20 1038 28 COLOUR_TEXT_REGION 20 1038 28 1038 51 STRAND 76 1038 85 COLOUR_TEXT_REGION 76 1038 85 1038 51 STRAND 91 1038 97 COLOUR_TEXT_REGION 91 1038 97 1038 51 HELIX 35 1038 44 COLOUR_TEXT_REGION 35 1038 44 1038 50 HELIX 47 1038 71 COLOUR_TEXT_REGION 47 1038 71 1038 50 HELIX 86 1038 87 COLOUR_TEXT_REGION 86 1038 87 1038 50