Filename Description -------- ----------- jp__PfdpP7.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp__PfdpP7.als Alscript command file. Used to generate PS/PDF outputjp__PfdpP7.blast.gz PSIBLAST output (compressed) jp__PfdpP7.coils.csv The output from coils in CSV format jp__PfdpP7.coilseq.lupas_14 The output from coils using a window length of 14 jp__PfdpP7.coilseq.lupas_21 The output from coils using a window length of 21 jp__PfdpP7.coilseq.lupas_28 The output from coils using a window length of 28 jp__PfdpP7.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp__PfdpP7.concise.blc A BLC file of the prediction and alignment jp__PfdpP7.concise.pdf A PDF file of the prediction and alignment jp__PfdpP7.fasta Input query sequence in FASTA format jp__PfdpP7.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp__PfdpP7.hmm The HHMer2 profile of the alignment jp__PfdpP7.html A HTML file of the prediction and alignment jp__PfdpP7.input Your raw input jp__PfdpP7.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp__PfdpP7.jnet The output from Jnet jp__PfdpP7.profile PSIBLAST profile jp__PfdpP7.pssm PSIBLAST PSSM in a format for Jnet jp__PfdpP7.seq Your sequence jp__PfdpP7.simple.html The brief HTML output of the query sequence and prediction only jp__PfdpP7.svg.html A Jalview generated SVG file with summary of the results.