SILENT_MODE
BLOCK_FILE jp__PfdpP7.concise.blc
MAX_NSEQ 821
MAX_INPUT_LEN 823
OUTPUT_FILE jp__PfdpP7.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 120 810   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 811 120 820 H SPACE
SUB_CHARS 1 811 120 820 E SPACE
SUB_CHARS 1 811 120 820 - SPACE
STRAND 5 814 12
COLOUR_TEXT_REGION 5 814 12 814 51
STRAND 40 814 40
COLOUR_TEXT_REGION 40 814 40 814 51
STRAND 43 814 48
COLOUR_TEXT_REGION 43 814 48 814 51
STRAND 53 814 59
COLOUR_TEXT_REGION 53 814 59 814 51
STRAND 64 814 69
COLOUR_TEXT_REGION 64 814 69 814 51
STRAND 74 814 81
COLOUR_TEXT_REGION 74 814 81 814 51
STRAND 104 814 110
COLOUR_TEXT_REGION 104 814 110 814 51
HELIX 22 814 36
COLOUR_TEXT_REGION 22 814 36 814 50
HELIX 88 814 98
COLOUR_TEXT_REGION 88 814 98 814 50
STRAND 6 819 12
COLOUR_TEXT_REGION 6 819 12 819 51
STRAND 44 819 48
COLOUR_TEXT_REGION 44 819 48 819 51
STRAND 53 819 59
COLOUR_TEXT_REGION 53 819 59 819 51
STRAND 63 819 68
COLOUR_TEXT_REGION 63 819 68 819 51
STRAND 74 819 81
COLOUR_TEXT_REGION 74 819 81 819 51
STRAND 104 819 110
COLOUR_TEXT_REGION 104 819 110 819 51
HELIX 4 819 5
COLOUR_TEXT_REGION 4 819 5 819 50
HELIX 22 819 36
COLOUR_TEXT_REGION 22 819 36 819 50
HELIX 88 819 98
COLOUR_TEXT_REGION 88 819 98 819 50
STRAND 5 820 11
COLOUR_TEXT_REGION 5 820 11 820 51
STRAND 40 820 47
COLOUR_TEXT_REGION 40 820 47 820 51
STRAND 53 820 59
COLOUR_TEXT_REGION 53 820 59 820 51
STRAND 64 820 69
COLOUR_TEXT_REGION 64 820 69 820 51
STRAND 74 820 81
COLOUR_TEXT_REGION 74 820 81 820 51
STRAND 104 820 110
COLOUR_TEXT_REGION 104 820 110 820 51
HELIX 22 820 35
COLOUR_TEXT_REGION 22 820 35 820 50
HELIX 88 820 99
COLOUR_TEXT_REGION 88 820 99 820 50