QUERY           : PPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVLDLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEMKQ : QUERY 
UniRef90_B9K7S9 : PPDAYSVETALQILENQEYRLVDIKEVDQYRDVEMKGKVAIFESKTGDVLLYAYRGEDAKQVWKKKSGFLSVRSILELPNMGKFSTILDGKRIVSWWKKRWFFTVEGRNGVDKFVKHVFRVYGVLKE : UniRef90_B9K7S9
UniRef90_F7YVF9 : PPDAFSASSALRIVQNH-YRLVLIEEIDGYEDVQMKGMVALYIKDNKQFLLYAFKGESPRKYWSKIFGIWSSRTYLDFPTSGLYSTRKSGKEIVVWWKNRWLFIAEGREDTETFASQVMDVYSRI-- : UniRef90_F7YVF9
UniRef90_A8F4M0 : PPRVYSISSAVKSLQD-SYLLVFVEEVDGYGPVEAKGVVASYVHDGKNYLFYGFKDESPKVYWKKIVGIWSSRTYFDLLNSGLYSSKKDGKYIVVWWKDVWMFIVESSSNAEDFANYVMNWFAKL-- : UniRef90_A8F4M0
UniRef90_H9UE66 : PPASYSVEAAINVIANK-YMLLDSGWVNGFGDMELEGRYATFDGVDGFLMVFKYEDDQAKASWDKITKRLRLKYLINMGTYGVFTIRLENTDLYSWYKENWLFVITG-DKIEKFVMDVNNIYKTIR- : UniRef90_H9UE66
UniRef90_A7HMP8 : PPSSYSQEAAINVLSNK-YYLIDSGYIEGFGDIYLEGRYAIFDGVDGIFMVFKYDDEEAKESWKKYNNPFKLKYFVNMGDYGVFTLRLENTDLYVWYKDNWLIVISG-DKIDNFVKDVNEIYKTIK- : UniRef90_A7HMP8
UniRef90_A6LP92 : -PGSFSLKSALLILDGFQYPLTSVVKVNEYGAKLGNGICGMFENFNGTFYVFKYVSSNAKSNWKNFRKQVGTYSWLD---RGYFQVKYKSIDIISWWKDNWLFIITGKD-AKEFFNYINEVYGEIK- : UniRef90_A6LP92
UniRef90_B7IF46 : -PGSFSLKSAISLLDSYEYPLVETGEINSLYGVQLRGMYGVFKNFDGMFYVFKYEDEKTKNDWNRL--IKTFGSVLKI-NYFKFSLFDRGYNVITWWKGNWLFVITGNNS-KEFFEYINKVYGMIQ- : UniRef90_B7IF46

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121---- :
OrigSeq         : PPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVLDLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEMKQ : OrigSeq

Jnet            : ----HHHHHHHHHHH----EEEEEEEE------EEEEEEEEEE----EEEEEEEE---HHHHHHH---EEEEEEEEE-----EEEEEE---EEEEEE---EEEEEE----HHHHHHHHHHHHHHH-- : Jnet
jhmm            : ----HHHHHHHHHHH----EEEEEEEE------EEEEEEEEEE----EEEEEEEE---HHHHHHHH--EEEEEEEEE------EEEEE---EEEEEE---EEEEEEE---HHHHHHHHHHHHHHH-- : jhmm
jpssm           : -----HHHHHHHHH-----EEEEEEEE-----EEEEEEEEEEE----EEEEEEEE----HHHHHH---EEEEEEEEE----EEEEEEE---EEEEEE---EEEEEE----HHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ----B-B-BBB-BB----BBBBBB--B--B--B-B-BBBBBB----B-BBBBBB----B---B--B---B-B-BBB-B---BBBBBB-----BBBBB---BBBBBBB---B--BB-BBB-BB--B-- : Jnet_25
Jnet_5          : ---------BB-BB------B-----B-------B-B-BB--------BBBB----------B------------------B----------BB-B----BBBBB--------BB--B--B------ : Jnet_5
Jnet_0          : ---------B----------------------------------------B-----------------------------------------------------B---------------------- : Jnet_0
Jnet Rel        : 9998227899888517985588887515787512447899996588658998861687213444203427899998168873299870770799985586589984078617899999999987449 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.