SILENT_MODE BLOCK_FILE jp_ZdxYRkp.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_ZdxYRkp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 111 11 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 12 111 21 H SPACE SUB_CHARS 1 12 111 21 E SPACE SUB_CHARS 1 12 111 21 - SPACE STRAND 37 15 40 COLOUR_TEXT_REGION 37 15 40 15 51 STRAND 88 15 93 COLOUR_TEXT_REGION 88 15 93 15 51 HELIX 12 15 27 COLOUR_TEXT_REGION 12 15 27 15 50 HELIX 41 15 47 COLOUR_TEXT_REGION 41 15 47 15 50 HELIX 49 15 56 COLOUR_TEXT_REGION 49 15 56 15 50 HELIX 62 15 67 COLOUR_TEXT_REGION 62 15 67 15 50 HELIX 74 15 81 COLOUR_TEXT_REGION 74 15 81 15 50 HELIX 97 15 108 COLOUR_TEXT_REGION 97 15 108 15 50 STRAND 36 20 39 COLOUR_TEXT_REGION 36 20 39 20 51 STRAND 88 20 93 COLOUR_TEXT_REGION 88 20 93 20 51 HELIX 15 20 27 COLOUR_TEXT_REGION 15 20 27 20 50 HELIX 40 20 56 COLOUR_TEXT_REGION 40 20 56 20 50 HELIX 62 20 67 COLOUR_TEXT_REGION 62 20 67 20 50 HELIX 74 20 81 COLOUR_TEXT_REGION 74 20 81 20 50 HELIX 97 20 109 COLOUR_TEXT_REGION 97 20 109 20 50 STRAND 37 21 40 COLOUR_TEXT_REGION 37 21 40 21 51 STRAND 88 21 93 COLOUR_TEXT_REGION 88 21 93 21 51 HELIX 12 21 28 COLOUR_TEXT_REGION 12 21 28 21 50 HELIX 43 21 46 COLOUR_TEXT_REGION 43 21 46 21 50 HELIX 49 21 56 COLOUR_TEXT_REGION 49 21 56 21 50 HELIX 63 21 67 COLOUR_TEXT_REGION 63 21 67 21 50 HELIX 74 21 81 COLOUR_TEXT_REGION 74 21 81 21 50 HELIX 97 21 98 COLOUR_TEXT_REGION 97 21 98 21 50 HELIX 100 21 107 COLOUR_TEXT_REGION 100 21 107 21 50