QUERY           : WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGWVALANSKKFQLLVEADKLSKIMQDDLNRYTS : QUERY 
UniRef90_A4UHQ4 : WSTTNDEENASVEAEIAHQIAESFSKKYKFPSRSSGIFLFNLRQLKMNLDDIVKEAKKIPGVVRLAQDGFRLPLRCILGGVGSVNSKKFQLLVNSDKLGKIMQDDLNRYLA : UniRef90_A4UHQ4
UniRef90_O56774 : WTASNEADDESVEAEIAHQIAESFSKKYKFPSRSSGIFLWNFEQLKMNLDEIVREVKEIPGVIKMAKDGMKLPLRCMLGGVASTHSRRFQILVNPEKLGKVMQEDLDKYLT : UniRef90_O56774
UniRef90_D4NRJ9 : WDNNQEEVD-DIEGEVAHQVAESFSKKYKFPSRSSGIFLWNFEQLKMNLDDIVKAALNIPGIDKIAEKGGKLPLRCILGYVSLSASKRFCLLADNDKTARLMQDDINNYIA : UniRef90_D4NRJ9
UniRef90_Q5VKP1 : -----EDDEGALESEIAHQVAESYSKKYKFPSKSSGIFLWNFEQLKMNLDDIVQVARGVPGISQIVERGGKLPLRCMLGYVGLETSKRFRSLVNQDKLCKLMQEDLNAYS- : UniRef90_Q5VKP1
UniRef90_R9Q7P1 : -SATETAELRDIDGEVDYQVAESFSQKFKFASRSSGILLWNFEHLKLNMDDIVKAAMNVPGVDLIADKEGKLPLRCILEFVALESSKRFWLFANNDKVATLIPDDVNSYMA : UniRef90_R9Q7P1
UniRef90_J7JWQ7 : -------EDEEVEAEIAHQVGESFAKKYKFPSRSSGIFLWNFEQLKMNLDDIVKTAQEVPGIIEWAREGKNLPLRGILGYVGLKHSKRFQLLVDQDRMSNLIQKDLDSYS- : UniRef90_J7JWQ7
UniRef90_Q505S2 : WSVANEEDDPSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKESKNVPGVTRLAHDGSKLPLRCV---------------------------------- : UniRef90_Q505S2

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101------- :
OrigSeq         : WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGWVALANSKKFQLLVEADKLSKIMQDDLNRYTS : OrigSeq

Jnet            : -----------HHHHHHHHHHHHHHHH---------EEEEHHHHHHH-HHHHHHHH-----HHHHHH------HHHHHHHH------EEEEEE---HHHHHHHHHHHH--- : Jnet
jhmm            : --------------HHHHHHHHHHHHH--------EEEEHHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHH------EEEEEE---HHHHHHHHHHHHH-- : jhmm
jpssm           : -----------HHHHHHHHHHHHHHHHH--------EEEE--HHHH--HHHHHHHH------HHHHH------HHHHHHHH------EEEEEE---HH-HHHHHHHH---- : jpssm

Lupas 14        : --------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -----------B---B---BB--B---B-B---BBBBBBBBB--B-B-B--BB--B--B--B--BB---B-BBBBBBBBBBBB--B--BBBBB----BB-BB---B--B-- : Jnet_25
Jnet_5          : ---------------B---B----------------BBB---------B--BB--------B---------B-B-BBB--B-------B-B----------B--------- : Jnet_5
Jnet_0          : --------------------------------------B------------------------------------------------------------------------ : Jnet_0
Jnet Rel        : 998888776303349999999999986146776771267124113222589998752788612444236887457887763377762578874461114223565223199 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.