SILENT_MODE BLOCK_FILE jp_PJ8iK98.concise.blc MAX_NSEQ 785 MAX_INPUT_LEN 787 OUTPUT_FILE jp_PJ8iK98.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 233 774 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 775 233 784 H SPACE SUB_CHARS 1 775 233 784 E SPACE SUB_CHARS 1 775 233 784 - SPACE STRAND 4 778 9 COLOUR_TEXT_REGION 4 778 9 778 51 STRAND 14 778 20 COLOUR_TEXT_REGION 14 778 20 778 51 STRAND 61 778 67 COLOUR_TEXT_REGION 61 778 67 778 51 STRAND 73 778 79 COLOUR_TEXT_REGION 73 778 79 778 51 STRAND 84 778 89 COLOUR_TEXT_REGION 84 778 89 778 51 STRAND 115 778 121 COLOUR_TEXT_REGION 115 778 121 778 51 STRAND 128 778 133 COLOUR_TEXT_REGION 128 778 133 778 51 STRAND 156 778 162 COLOUR_TEXT_REGION 156 778 162 778 51 STRAND 169 778 179 COLOUR_TEXT_REGION 169 778 179 778 51 STRAND 225 778 225 COLOUR_TEXT_REGION 225 778 225 778 51 HELIX 23 778 31 COLOUR_TEXT_REGION 23 778 31 778 50 HELIX 36 778 54 COLOUR_TEXT_REGION 36 778 54 778 50 HELIX 139 778 149 COLOUR_TEXT_REGION 139 778 149 778 50 HELIX 154 778 155 COLOUR_TEXT_REGION 154 778 155 778 50 HELIX 186 778 196 COLOUR_TEXT_REGION 186 778 196 778 50 HELIX 201 778 206 COLOUR_TEXT_REGION 201 778 206 778 50 HELIX 211 778 219 COLOUR_TEXT_REGION 211 778 219 778 50 STRAND 4 783 9 COLOUR_TEXT_REGION 4 783 9 783 51 STRAND 14 783 20 COLOUR_TEXT_REGION 14 783 20 783 51 STRAND 61 783 67 COLOUR_TEXT_REGION 61 783 67 783 51 STRAND 73 783 79 COLOUR_TEXT_REGION 73 783 79 783 51 STRAND 84 783 89 COLOUR_TEXT_REGION 84 783 89 783 51 STRAND 115 783 121 COLOUR_TEXT_REGION 115 783 121 783 51 STRAND 128 783 134 COLOUR_TEXT_REGION 128 783 134 783 51 STRAND 155 783 161 COLOUR_TEXT_REGION 155 783 161 783 51 STRAND 169 783 173 COLOUR_TEXT_REGION 169 783 173 783 51 HELIX 23 783 31 COLOUR_TEXT_REGION 23 783 31 783 50 HELIX 36 783 54 COLOUR_TEXT_REGION 36 783 54 783 50 HELIX 108 783 108 COLOUR_TEXT_REGION 108 783 108 783 50 HELIX 139 783 149 COLOUR_TEXT_REGION 139 783 149 783 50 HELIX 154 783 154 COLOUR_TEXT_REGION 154 783 154 783 50 HELIX 174 783 179 COLOUR_TEXT_REGION 174 783 179 783 50 HELIX 187 783 196 COLOUR_TEXT_REGION 187 783 196 783 50 HELIX 201 783 206 COLOUR_TEXT_REGION 201 783 206 783 50 HELIX 211 783 219 COLOUR_TEXT_REGION 211 783 219 783 50 STRAND 4 784 9 COLOUR_TEXT_REGION 4 784 9 784 51 STRAND 14 784 20 COLOUR_TEXT_REGION 14 784 20 784 51 STRAND 61 784 67 COLOUR_TEXT_REGION 61 784 67 784 51 STRAND 73 784 79 COLOUR_TEXT_REGION 73 784 79 784 51 STRAND 84 784 90 COLOUR_TEXT_REGION 84 784 90 784 51 STRAND 115 784 120 COLOUR_TEXT_REGION 115 784 120 784 51 STRAND 128 784 133 COLOUR_TEXT_REGION 128 784 133 784 51 STRAND 156 784 163 COLOUR_TEXT_REGION 156 784 163 784 51 STRAND 169 784 172 COLOUR_TEXT_REGION 169 784 172 784 51 STRAND 174 784 179 COLOUR_TEXT_REGION 174 784 179 784 51 STRAND 224 784 225 COLOUR_TEXT_REGION 224 784 225 784 51 HELIX 22 784 31 COLOUR_TEXT_REGION 22 784 31 784 50 HELIX 36 784 53 COLOUR_TEXT_REGION 36 784 53 784 50 HELIX 139 784 151 COLOUR_TEXT_REGION 139 784 151 784 50 HELIX 155 784 155 COLOUR_TEXT_REGION 155 784 155 784 50 HELIX 185 784 196 COLOUR_TEXT_REGION 185 784 196 784 50 HELIX 201 784 205 COLOUR_TEXT_REGION 201 784 205 784 50 HELIX 211 784 219 COLOUR_TEXT_REGION 211 784 219 784 50