SILENT_MODE
BLOCK_FILE jp_EEqnrO1.concise.blc
MAX_NSEQ 815
MAX_INPUT_LEN 817
OUTPUT_FILE jp_EEqnrO1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 57 804   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 805 57 814 H SPACE
SUB_CHARS 1 805 57 814 E SPACE
SUB_CHARS 1 805 57 814 - SPACE
STRAND 31 808 36
COLOUR_TEXT_REGION 31 808 36 808 51
STRAND 41 808 44
COLOUR_TEXT_REGION 41 808 44 808 51
HELIX 6 808 14
COLOUR_TEXT_REGION 6 808 14 808 50
HELIX 18 808 26
COLOUR_TEXT_REGION 18 808 26 808 50
HELIX 46 808 54
COLOUR_TEXT_REGION 46 808 54 808 50
STRAND 31 813 36
COLOUR_TEXT_REGION 31 813 36 813 51
STRAND 41 813 44
COLOUR_TEXT_REGION 41 813 44 813 51
HELIX 6 813 14
COLOUR_TEXT_REGION 6 813 14 813 50
HELIX 18 813 26
COLOUR_TEXT_REGION 18 813 26 813 50
HELIX 46 813 54
COLOUR_TEXT_REGION 46 813 54 813 50
STRAND 31 814 37
COLOUR_TEXT_REGION 31 814 37 814 51
STRAND 41 814 44
COLOUR_TEXT_REGION 41 814 44 814 51
HELIX 5 814 15
COLOUR_TEXT_REGION 5 814 15 814 50
HELIX 18 814 27
COLOUR_TEXT_REGION 18 814 27 814 50
HELIX 46 814 54
COLOUR_TEXT_REGION 46 814 54 814 50