SILENT_MODE BLOCK_FILE jp_CI4S3ul.concise.blc MAX_NSEQ 903 MAX_INPUT_LEN 905 OUTPUT_FILE jp_CI4S3ul.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 360 892 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 893 360 902 H SPACE SUB_CHARS 1 893 360 902 E SPACE SUB_CHARS 1 893 360 902 - SPACE STRAND 68 896 72 COLOUR_TEXT_REGION 68 896 72 896 51 STRAND 93 896 98 COLOUR_TEXT_REGION 93 896 98 896 51 STRAND 117 896 121 COLOUR_TEXT_REGION 117 896 121 896 51 STRAND 143 896 149 COLOUR_TEXT_REGION 143 896 149 896 51 STRAND 155 896 159 COLOUR_TEXT_REGION 155 896 159 896 51 STRAND 168 896 173 COLOUR_TEXT_REGION 168 896 173 896 51 STRAND 188 896 191 COLOUR_TEXT_REGION 188 896 191 896 51 STRAND 297 896 302 COLOUR_TEXT_REGION 297 896 302 896 51 STRAND 323 896 323 COLOUR_TEXT_REGION 323 896 323 896 51 STRAND 333 896 336 COLOUR_TEXT_REGION 333 896 336 896 51 HELIX 16 896 26 COLOUR_TEXT_REGION 16 896 26 896 50 HELIX 44 896 61 COLOUR_TEXT_REGION 44 896 61 896 50 HELIX 76 896 87 COLOUR_TEXT_REGION 76 896 87 896 50 HELIX 103 896 113 COLOUR_TEXT_REGION 103 896 113 896 50 HELIX 132 896 137 COLOUR_TEXT_REGION 132 896 137 896 50 HELIX 192 896 192 COLOUR_TEXT_REGION 192 896 192 896 50 HELIX 205 896 215 COLOUR_TEXT_REGION 205 896 215 896 50 HELIX 226 896 230 COLOUR_TEXT_REGION 226 896 230 896 50 HELIX 241 896 256 COLOUR_TEXT_REGION 241 896 256 896 50 HELIX 260 896 280 COLOUR_TEXT_REGION 260 896 280 896 50 HELIX 309 896 319 COLOUR_TEXT_REGION 309 896 319 896 50 HELIX 343 896 358 COLOUR_TEXT_REGION 343 896 358 896 50 STRAND 4 901 5 COLOUR_TEXT_REGION 4 901 5 901 51 STRAND 68 901 72 COLOUR_TEXT_REGION 68 901 72 901 51 STRAND 93 901 98 COLOUR_TEXT_REGION 93 901 98 901 51 STRAND 117 901 121 COLOUR_TEXT_REGION 117 901 121 901 51 STRAND 142 901 149 COLOUR_TEXT_REGION 142 901 149 901 51 STRAND 156 901 157 COLOUR_TEXT_REGION 156 901 157 901 51 STRAND 168 901 173 COLOUR_TEXT_REGION 168 901 173 901 51 STRAND 188 901 192 COLOUR_TEXT_REGION 188 901 192 901 51 STRAND 205 901 208 COLOUR_TEXT_REGION 205 901 208 901 51 STRAND 297 901 302 COLOUR_TEXT_REGION 297 901 302 901 51 STRAND 322 901 323 COLOUR_TEXT_REGION 322 901 323 901 51 STRAND 333 901 337 COLOUR_TEXT_REGION 333 901 337 901 51 HELIX 16 901 27 COLOUR_TEXT_REGION 16 901 27 901 50 HELIX 44 901 61 COLOUR_TEXT_REGION 44 901 61 901 50 HELIX 76 901 86 COLOUR_TEXT_REGION 76 901 86 901 50 HELIX 103 901 113 COLOUR_TEXT_REGION 103 901 113 901 50 HELIX 130 901 136 COLOUR_TEXT_REGION 130 901 136 901 50 HELIX 161 901 161 COLOUR_TEXT_REGION 161 901 161 901 50 HELIX 210 901 215 COLOUR_TEXT_REGION 210 901 215 901 50 HELIX 227 901 230 COLOUR_TEXT_REGION 227 901 230 901 50 HELIX 241 901 257 COLOUR_TEXT_REGION 241 901 257 901 50 HELIX 260 901 280 COLOUR_TEXT_REGION 260 901 280 901 50 HELIX 309 901 319 COLOUR_TEXT_REGION 309 901 319 901 50 HELIX 343 901 358 COLOUR_TEXT_REGION 343 901 358 901 50 STRAND 68 902 72 COLOUR_TEXT_REGION 68 902 72 902 51 STRAND 93 902 99 COLOUR_TEXT_REGION 93 902 99 902 51 STRAND 117 902 121 COLOUR_TEXT_REGION 117 902 121 902 51 STRAND 144 902 149 COLOUR_TEXT_REGION 144 902 149 902 51 STRAND 154 902 160 COLOUR_TEXT_REGION 154 902 160 902 51 STRAND 167 902 171 COLOUR_TEXT_REGION 167 902 171 902 51 STRAND 298 902 302 COLOUR_TEXT_REGION 298 902 302 902 51 STRAND 333 902 336 COLOUR_TEXT_REGION 333 902 336 902 51 HELIX 16 902 25 COLOUR_TEXT_REGION 16 902 25 902 50 HELIX 44 902 61 COLOUR_TEXT_REGION 44 902 61 902 50 HELIX 77 902 88 COLOUR_TEXT_REGION 77 902 88 902 50 HELIX 104 902 112 COLOUR_TEXT_REGION 104 902 112 902 50 HELIX 133 902 138 COLOUR_TEXT_REGION 133 902 138 902 50 HELIX 186 902 193 COLOUR_TEXT_REGION 186 902 193 902 50 HELIX 205 902 215 COLOUR_TEXT_REGION 205 902 215 902 50 HELIX 224 902 231 COLOUR_TEXT_REGION 224 902 231 902 50 HELIX 241 902 256 COLOUR_TEXT_REGION 241 902 256 902 50 HELIX 260 902 280 COLOUR_TEXT_REGION 260 902 280 902 50 HELIX 308 902 319 COLOUR_TEXT_REGION 308 902 319 902 50 HELIX 343 902 358 COLOUR_TEXT_REGION 343 902 358 902 50