SILENT_MODE BLOCK_FILE jp_vjhfXIO.concise.blc MAX_NSEQ 797 MAX_INPUT_LEN 799 OUTPUT_FILE jp_vjhfXIO.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 216 786 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 787 216 796 H SPACE SUB_CHARS 1 787 216 796 E SPACE SUB_CHARS 1 787 216 796 - SPACE STRAND 12 790 16 COLOUR_TEXT_REGION 12 790 16 790 51 STRAND 43 790 48 COLOUR_TEXT_REGION 43 790 48 790 51 STRAND 52 790 56 COLOUR_TEXT_REGION 52 790 56 790 51 STRAND 71 790 74 COLOUR_TEXT_REGION 71 790 74 790 51 STRAND 79 790 83 COLOUR_TEXT_REGION 79 790 83 790 51 STRAND 88 790 95 COLOUR_TEXT_REGION 88 790 95 790 51 STRAND 133 790 135 COLOUR_TEXT_REGION 133 790 135 790 51 STRAND 141 790 150 COLOUR_TEXT_REGION 141 790 150 790 51 STRAND 154 790 162 COLOUR_TEXT_REGION 154 790 162 790 51 STRAND 183 790 186 COLOUR_TEXT_REGION 183 790 186 790 51 HELIX 22 790 37 COLOUR_TEXT_REGION 22 790 37 790 50 HELIX 102 790 119 COLOUR_TEXT_REGION 102 790 119 790 50 HELIX 187 790 189 COLOUR_TEXT_REGION 187 790 189 790 50 HELIX 196 790 211 COLOUR_TEXT_REGION 196 790 211 790 50 STRAND 12 795 16 COLOUR_TEXT_REGION 12 795 16 795 51 STRAND 43 795 48 COLOUR_TEXT_REGION 43 795 48 795 51 STRAND 52 795 57 COLOUR_TEXT_REGION 52 795 57 795 51 STRAND 71 795 74 COLOUR_TEXT_REGION 71 795 74 795 51 STRAND 79 795 83 COLOUR_TEXT_REGION 79 795 83 795 51 STRAND 88 795 95 COLOUR_TEXT_REGION 88 795 95 795 51 STRAND 133 795 135 COLOUR_TEXT_REGION 133 795 135 795 51 STRAND 141 795 151 COLOUR_TEXT_REGION 141 795 151 795 51 STRAND 154 795 161 COLOUR_TEXT_REGION 154 795 161 795 51 STRAND 183 795 186 COLOUR_TEXT_REGION 183 795 186 795 51 HELIX 22 795 37 COLOUR_TEXT_REGION 22 795 37 795 50 HELIX 102 795 119 COLOUR_TEXT_REGION 102 795 119 795 50 HELIX 187 795 189 COLOUR_TEXT_REGION 187 795 189 795 50 HELIX 196 795 211 COLOUR_TEXT_REGION 196 795 211 795 50 STRAND 12 796 16 COLOUR_TEXT_REGION 12 796 16 796 51 STRAND 43 796 48 COLOUR_TEXT_REGION 43 796 48 796 51 STRAND 52 796 54 COLOUR_TEXT_REGION 52 796 54 796 51 STRAND 71 796 74 COLOUR_TEXT_REGION 71 796 74 796 51 STRAND 79 796 83 COLOUR_TEXT_REGION 79 796 83 796 51 STRAND 88 796 94 COLOUR_TEXT_REGION 88 796 94 796 51 STRAND 133 796 134 COLOUR_TEXT_REGION 133 796 134 796 51 STRAND 154 796 155 COLOUR_TEXT_REGION 154 796 155 796 51 STRAND 159 796 162 COLOUR_TEXT_REGION 159 796 162 796 51 STRAND 184 796 186 COLOUR_TEXT_REGION 184 796 186 796 51 HELIX 22 796 37 COLOUR_TEXT_REGION 22 796 37 796 50 HELIX 95 796 95 COLOUR_TEXT_REGION 95 796 95 796 50 HELIX 102 796 120 COLOUR_TEXT_REGION 102 796 120 796 50 HELIX 142 796 146 COLOUR_TEXT_REGION 142 796 146 796 50 HELIX 187 796 189 COLOUR_TEXT_REGION 187 796 189 796 50 HELIX 196 796 211 COLOUR_TEXT_REGION 196 796 211 796 50