QUERY : YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS : QUERY
UniRef90_UPI0004214649 : YDGTNCKAPGNCWEPKPGYPEKVAGSKYDPKHDPVELNKQQEAIKAMEARNQKRWEHFKNTGKFVYKVD--- : UniRef90_UPI0004214649
UniRef90_Q07LW2 : YDGTKCKAPGNCWEPKPGYPEKVAGSKYDPKHNVAELNKQSDSIKAMEQRNEQRVAHFKNTGKWVYEVSKL- : UniRef90_Q07LW2
UniRef90_B8EJP3 : YDGQTCVAPGNCWEPKPGFPAKIAGSKYDPKHNPKELAKQSESITAMEERNAKRVAAFKKTGKFVYEVEKIA : UniRef90_B8EJP3
UniRef90_UPI0003B3ECFF : YSGTNCKEPGVCWEPKPGYPEKVAGTRYDPKHDPAELSKQSKSIEAMNQRNKQRWQHLKKTGKFVYDVDEI- : UniRef90_UPI0003B3ECFF
UniRef90_UPI00037A5ACA : YDGQHCKAPGNCWEPHPGYPEKIAGSKYDPKHDPKEIAKQADSERQMEERNKKRVDYFKKSGKFVYDVAKI- : UniRef90_UPI00037A5ACA
UniRef90_P38540 : YDGQNCKEPGNCWENKPGYPEKIAGSKYDPKHDPVELNKQEESIKAMDARNAKRIANAKSSGNFVFDVK--- : UniRef90_P38540
UniRef90_G7Z9T8 : -DGTNCKAPGNCWEPKPGYPAKIAGSKYDPKHDPMELNKQQESIKAMDERNRQRVDHFKKTGTFIYDVKKI- : UniRef90_G7Z9T8
UniRef90_C6XAQ3 : YDGTNCKEPGNCWEPKPGFPDKIAGSKYDPKHDPVELSKQEKAIKAMNERNAKRVANLKETGQFKYDVK--- : UniRef90_C6XAQ3
UniRef90_UPI00045E6314 : -DGTNCKAPGNCWEPKPGYPDKVAGSKYDPKHNPAELAKQGESITQMEARNKKRVEYFQKTGQFVYDVSKI- : UniRef90_UPI00045E6314
UniRef90_P29898 : YDGTNCKAPGNCWEPKPDYPAKVEGSKYDPQHDPAELSKQGESLAVMDARNEWRVWNMKKTGKFEYDVKKI- : UniRef90_P29898
UniRef90_A0A023D691 : YDGTHCKKPGVCWEPQPGYPEQLVGSKYDPHFDPAELAKQQESEDAMVARNKARTAYFIKTGTWVEDVNQI- : UniRef90_A0A023D691
UniRef90_B4Y5L8 : -DGTNCKAPGNCWEPKPGFPDKIAGSKYDPKHDPKELAKQQASVEAMEQRNQKRVAYFKKTGRWIYEVDKI- : UniRef90_B4Y5L8
UniRef90_A1WIX2 : YDGTNCKAAGDCWEPKPGYPAKLAGSKYDPKHDPAELNKNQQAVQSMEERNAKRLANARATGTFKFDVN--- : UniRef90_A1WIX2
UniRef90_F8J9M7 : -DGTHCRAPGNCWEPKPGFPEKIKGTKFDPKHDPKQLAKQSESMAAMEERNAKRAENFKKTGKWVYDVSKIQ : UniRef90_F8J9M7
UniRef90_Q0BVA7 : YDGTHCKAPGVCWEPEPGYPAILKGSKYDPHHDPKELAKQQAALDAQEARNKLRVENFVKTGKFEFDVNKLQ : UniRef90_Q0BVA7
UniRef90_UPI000361BEB8 : YDGTKCKEAGNCWEPKPGYPAQVAGSKYDPKHDPNELNKQAQSIKDMEARNAKRTELMAKTGKFVYDVE--- : UniRef90_UPI000361BEB8
UniRef90_UPI00047EEF0A : YDGTHCKAPGNCWEPQPGYPEQGIGSKYDPHHDPKELAKQQEAEDQMDERNAKRVRYFKSWGQFIYDVNKI- : UniRef90_UPI00047EEF0A
UniRef90_UPI00039E4D29 : -DGTKCKAPGDCWEPKPGFPEKVAGSKYDPKHDPKELAKNQSAIAAMEERNKKRAEHFKKTGAFVYDVTKI- : UniRef90_UPI00039E4D29
UniRef90_V5SHD3 : -DGTNCKAPGNCWEPKPGYPDKVAGSKYDPKHDPKELAKQQQALDDQSARNAKRAEHFKKTGNWVYDVSKL- : UniRef90_V5SHD3
UniRef90_UPI00045EB9C6 : YDGTKCKAAGNCWEPKPGYPDKVAGSKYDPKHDAKELSKQGDSIKQMEARNAKRVEQLNATGTFKYDVN--- : UniRef90_UPI00045EB9C6
UniRef90_M7YHI3 : -DGQTCKAPGNCWEPKPGFPEKVAGSKYDPKHDPKEVSKQADSIKQMEERNRQRVDHAQKTGKFEYDVAKIS : UniRef90_M7YHI3
UniRef90_F7Q8V5 : -DGTNCSEPGVCWEPKPGYPDKIEGSKYDPKHSDSELNKQQESIQGMEKRNAMRVEHFKKTGEWVNDTDEL- : UniRef90_F7Q8V5
UniRef90_D5MI81 : YDGTKCKEPGACWEPKPGYPARVAGSKYDPKHDPKEVAKQELAHKAMDERNEKRWKHFQETGVWKYDVK--- : UniRef90_D5MI81
UniRef90_A3FJ51 : YDGTKCKAAGDCWEAKPGFPDKIKGSKYDPKHSEKELNKQDAALKAMEKRNAERVEQFKKTGKWVY------ : UniRef90_A3FJ51
UniRef90_G3J2G6 : -DGQNCSEPGVCWEPKPGYPEKVAGSKYDPKHDVNELNKQAQSVIEMEERNKKRQENLAKTGKFVYDVDDI- : UniRef90_G3J2G6
UniRef90_I1XG61 : YDGTKCQEAGKCWEAKPGFPEKIKGSKFDPKHSQAELDKQDSAMEAMEARNAKRVENFKKSGKWSY------ : UniRef90_I1XG61
UniRef90_UPI00036FA0B6 : --GTNCKEPGVCWEPKPGYPAKIKGSKYDPKHDPKEINKQSASIQAMEERNKKRADNFAKTGKFEYDVSKI- : UniRef90_UPI00036FA0B6
UniRef90_Q1GZM9 : -DGQTCRAPGDCWQPKPGYPEKIAGTKYDPKHDPAELSKQEAAIKAIDERNAKRIANAKATGTFKFDVK--- : UniRef90_Q1GZM9
UniRef90_M7NSZ0 : -DGTQCRAPGDCWQAKPGFPEKIEGSKYDPKHSEVELNKQTQAMNAMEERNRKRAENFKKTGTWNY------ : UniRef90_M7NSZ0
UniRef90_I1YK15 : -DGTNCKGDGNCWEAKPGYPDKIKGSKYDPKHSKTELEKQTTSMEAMEERNAKRVENFKKTGKWSY------ : UniRef90_I1YK15
: 1---------11--------21--------31--------41--------51--------61--------71 :
OrigSeq : YDGTKCKAAGNCWEPKPGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRVENFKKTGKFEYDVAKIS : OrigSeq
Jnet : ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH---EEEE----- : Jnet
jhmm : -----------------------E------------HHHHHHHHHHHHHH-HHHHHHHHH---EEEE----- : jhmm
jpssm : ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---EEEEE---- : jpssm
Lupas 14 : ------------------------------------------------------------------------ : Lupas 14
Lupas 21 : ------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------ : Lupas 28
Jnet_25 : --B--B---B-BB-----B---B----B--------B-----BB--B--B---BB--B---B-B-B-B--B- : Jnet_25
Jnet_5 : ---------------------------------------------------------B-------------- : Jnet_5
Jnet_0 : ------------------------------------------------------------------------ : Jnet_0
Jnet Rel : 898877777777777777765112677777764202589999999999994999999861686488715899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.