SILENT_MODE BLOCK_FILE jp_1pOxFA5.concise.blc MAX_NSEQ 304 MAX_INPUT_LEN 306 OUTPUT_FILE jp_1pOxFA5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 127 293 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 294 127 303 H SPACE SUB_CHARS 1 294 127 303 E SPACE SUB_CHARS 1 294 127 303 - SPACE STRAND 52 297 57 COLOUR_TEXT_REGION 52 297 57 297 51 STRAND 79 297 87 COLOUR_TEXT_REGION 79 297 87 297 51 STRAND 94 297 100 COLOUR_TEXT_REGION 94 297 100 297 51 STRAND 111 297 116 COLOUR_TEXT_REGION 111 297 116 297 51 HELIX 24 297 36 COLOUR_TEXT_REGION 24 297 36 297 50 HELIX 63 297 69 COLOUR_TEXT_REGION 63 297 69 297 50 STRAND 52 302 57 COLOUR_TEXT_REGION 52 302 57 302 51 STRAND 79 302 87 COLOUR_TEXT_REGION 79 302 87 302 51 STRAND 94 302 100 COLOUR_TEXT_REGION 94 302 100 302 51 STRAND 111 302 115 COLOUR_TEXT_REGION 111 302 115 302 51 HELIX 24 302 36 COLOUR_TEXT_REGION 24 302 36 302 50 HELIX 63 302 69 COLOUR_TEXT_REGION 63 302 69 302 50 STRAND 52 303 58 COLOUR_TEXT_REGION 52 303 58 303 51 STRAND 79 303 86 COLOUR_TEXT_REGION 79 303 86 303 51 STRAND 94 303 100 COLOUR_TEXT_REGION 94 303 100 303 51 STRAND 111 303 118 COLOUR_TEXT_REGION 111 303 118 303 51 HELIX 24 303 36 COLOUR_TEXT_REGION 24 303 36 303 50 HELIX 63 303 69 COLOUR_TEXT_REGION 63 303 69 303 50