SILENT_MODE BLOCK_FILE jp_8Tw3kBP.concise.blc MAX_NSEQ 576 MAX_INPUT_LEN 578 OUTPUT_FILE jp_8Tw3kBP.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 115 565 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 566 115 575 H SPACE SUB_CHARS 1 566 115 575 E SPACE SUB_CHARS 1 566 115 575 - SPACE STRAND 26 569 32 COLOUR_TEXT_REGION 26 569 32 569 51 STRAND 35 569 38 COLOUR_TEXT_REGION 35 569 38 569 51 STRAND 66 569 70 COLOUR_TEXT_REGION 66 569 70 569 51 STRAND 88 569 94 COLOUR_TEXT_REGION 88 569 94 569 51 STRAND 105 569 112 COLOUR_TEXT_REGION 105 569 112 569 51 HELIX 11 569 22 COLOUR_TEXT_REGION 11 569 22 569 50 HELIX 39 569 49 COLOUR_TEXT_REGION 39 569 49 569 50 HELIX 74 569 85 COLOUR_TEXT_REGION 74 569 85 569 50 STRAND 26 574 32 COLOUR_TEXT_REGION 26 574 32 574 51 STRAND 35 574 38 COLOUR_TEXT_REGION 35 574 38 574 51 STRAND 66 574 71 COLOUR_TEXT_REGION 66 574 71 574 51 STRAND 88 574 94 COLOUR_TEXT_REGION 88 574 94 574 51 STRAND 105 574 112 COLOUR_TEXT_REGION 105 574 112 574 51 HELIX 11 574 22 COLOUR_TEXT_REGION 11 574 22 574 50 HELIX 40 574 49 COLOUR_TEXT_REGION 40 574 49 574 50 HELIX 74 574 85 COLOUR_TEXT_REGION 74 574 85 574 50 STRAND 26 575 32 COLOUR_TEXT_REGION 26 575 32 575 51 STRAND 35 575 39 COLOUR_TEXT_REGION 35 575 39 575 51 STRAND 53 575 56 COLOUR_TEXT_REGION 53 575 56 575 51 STRAND 66 575 70 COLOUR_TEXT_REGION 66 575 70 575 51 STRAND 88 575 94 COLOUR_TEXT_REGION 88 575 94 575 51 STRAND 105 575 112 COLOUR_TEXT_REGION 105 575 112 575 51 HELIX 11 575 22 COLOUR_TEXT_REGION 11 575 22 575 50 HELIX 40 575 50 COLOUR_TEXT_REGION 40 575 50 575 50 HELIX 75 575 84 COLOUR_TEXT_REGION 75 575 84 575 50