SILENT_MODE
BLOCK_FILE jp_T3VQJez.concise.blc
MAX_NSEQ 764
MAX_INPUT_LEN 766
OUTPUT_FILE jp_T3VQJez.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 162 753   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 754 162 763 H SPACE
SUB_CHARS 1 754 162 763 E SPACE
SUB_CHARS 1 754 162 763 - SPACE
STRAND 12 757 19
COLOUR_TEXT_REGION 12 757 19 757 51
STRAND 25 757 30
COLOUR_TEXT_REGION 25 757 30 757 51
STRAND 33 757 38
COLOUR_TEXT_REGION 33 757 38 757 51
STRAND 53 757 57
COLOUR_TEXT_REGION 53 757 57 757 51
STRAND 64 757 69
COLOUR_TEXT_REGION 64 757 69 757 51
STRAND 76 757 80
COLOUR_TEXT_REGION 76 757 80 757 51
STRAND 83 757 88
COLOUR_TEXT_REGION 83 757 88 757 51
STRAND 101 757 103
COLOUR_TEXT_REGION 101 757 103 757 51
STRAND 112 757 117
COLOUR_TEXT_REGION 112 757 117 757 51
STRAND 123 757 127
COLOUR_TEXT_REGION 123 757 127 757 51
STRAND 130 757 134
COLOUR_TEXT_REGION 130 757 134 757 51
STRAND 153 757 156
COLOUR_TEXT_REGION 153 757 156 757 51
HELIX 93 757 95
COLOUR_TEXT_REGION 93 757 95 757 50
STRAND 12 762 19
COLOUR_TEXT_REGION 12 762 19 762 51
STRAND 25 762 30
COLOUR_TEXT_REGION 25 762 30 762 51
STRAND 33 762 38
COLOUR_TEXT_REGION 33 762 38 762 51
STRAND 53 762 57
COLOUR_TEXT_REGION 53 762 57 762 51
STRAND 64 762 69
COLOUR_TEXT_REGION 64 762 69 762 51
STRAND 76 762 80
COLOUR_TEXT_REGION 76 762 80 762 51
STRAND 83 762 88
COLOUR_TEXT_REGION 83 762 88 762 51
STRAND 101 762 103
COLOUR_TEXT_REGION 101 762 103 762 51
STRAND 112 762 116
COLOUR_TEXT_REGION 112 762 116 762 51
STRAND 123 762 127
COLOUR_TEXT_REGION 123 762 127 762 51
STRAND 130 762 134
COLOUR_TEXT_REGION 130 762 134 762 51
STRAND 154 762 156
COLOUR_TEXT_REGION 154 762 156 762 51
HELIX 94 762 94
COLOUR_TEXT_REGION 94 762 94 762 50
STRAND 12 763 19
COLOUR_TEXT_REGION 12 763 19 763 51
STRAND 25 763 29
COLOUR_TEXT_REGION 25 763 29 763 51
STRAND 33 763 38
COLOUR_TEXT_REGION 33 763 38 763 51
STRAND 53 763 57
COLOUR_TEXT_REGION 53 763 57 763 51
STRAND 64 763 70
COLOUR_TEXT_REGION 64 763 70 763 51
STRAND 76 763 79
COLOUR_TEXT_REGION 76 763 79 763 51
STRAND 83 763 88
COLOUR_TEXT_REGION 83 763 88 763 51
STRAND 101 763 104
COLOUR_TEXT_REGION 101 763 104 763 51
STRAND 112 763 117
COLOUR_TEXT_REGION 112 763 117 763 51
STRAND 123 763 127
COLOUR_TEXT_REGION 123 763 127 763 51
STRAND 130 763 135
COLOUR_TEXT_REGION 130 763 135 763 51
STRAND 153 763 157
COLOUR_TEXT_REGION 153 763 157 763 51
HELIX 93 763 96
COLOUR_TEXT_REGION 93 763 96 763 50