SILENT_MODE BLOCK_FILE jp_SXDiw1P.concise.blc MAX_NSEQ 332 MAX_INPUT_LEN 334 OUTPUT_FILE jp_SXDiw1P.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 140 321 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 322 140 331 H SPACE SUB_CHARS 1 322 140 331 E SPACE SUB_CHARS 1 322 140 331 - SPACE STRAND 26 325 33 COLOUR_TEXT_REGION 26 325 33 325 51 STRAND 57 325 57 COLOUR_TEXT_REGION 57 325 57 325 51 STRAND 74 325 79 COLOUR_TEXT_REGION 74 325 79 325 51 STRAND 88 325 93 COLOUR_TEXT_REGION 88 325 93 325 51 STRAND 124 325 126 COLOUR_TEXT_REGION 124 325 126 325 51 HELIX 41 325 49 COLOUR_TEXT_REGION 41 325 49 325 50 HELIX 65 325 70 COLOUR_TEXT_REGION 65 325 70 325 50 HELIX 104 325 113 COLOUR_TEXT_REGION 104 325 113 325 50 HELIX 132 325 136 COLOUR_TEXT_REGION 132 325 136 325 50 STRAND 25 330 33 COLOUR_TEXT_REGION 25 330 33 330 51 STRAND 74 330 79 COLOUR_TEXT_REGION 74 330 79 330 51 STRAND 88 330 93 COLOUR_TEXT_REGION 88 330 93 330 51 STRAND 124 330 126 COLOUR_TEXT_REGION 124 330 126 330 51 HELIX 7 330 13 COLOUR_TEXT_REGION 7 330 13 330 50 HELIX 40 330 49 COLOUR_TEXT_REGION 40 330 49 330 50 HELIX 64 330 70 COLOUR_TEXT_REGION 64 330 70 330 50 HELIX 103 330 114 COLOUR_TEXT_REGION 103 330 114 330 50 HELIX 132 330 137 COLOUR_TEXT_REGION 132 330 137 330 50 STRAND 26 331 32 COLOUR_TEXT_REGION 26 331 32 331 51 STRAND 50 331 50 COLOUR_TEXT_REGION 50 331 50 331 51 STRAND 56 331 58 COLOUR_TEXT_REGION 56 331 58 331 51 STRAND 74 331 78 COLOUR_TEXT_REGION 74 331 78 331 51 STRAND 88 331 93 COLOUR_TEXT_REGION 88 331 93 331 51 STRAND 105 331 111 COLOUR_TEXT_REGION 105 331 111 331 51 STRAND 125 331 125 COLOUR_TEXT_REGION 125 331 125 331 51 HELIX 67 331 70 COLOUR_TEXT_REGION 67 331 70 331 50 HELIX 117 331 124 COLOUR_TEXT_REGION 117 331 124 331 50 HELIX 132 331 134 COLOUR_TEXT_REGION 132 331 134 331 50