SILENT_MODE BLOCK_FILE jp_V1gwTV_.concise.blc MAX_NSEQ 416 MAX_INPUT_LEN 418 OUTPUT_FILE jp_V1gwTV_.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 122 405 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 406 122 415 H SPACE SUB_CHARS 1 406 122 415 E SPACE SUB_CHARS 1 406 122 415 - SPACE STRAND 11 409 14 COLOUR_TEXT_REGION 11 409 14 409 51 STRAND 39 409 44 COLOUR_TEXT_REGION 39 409 44 409 51 STRAND 97 409 103 COLOUR_TEXT_REGION 97 409 103 409 51 STRAND 109 409 117 COLOUR_TEXT_REGION 109 409 117 409 51 HELIX 23 409 35 COLOUR_TEXT_REGION 23 409 35 409 50 HELIX 79 409 92 COLOUR_TEXT_REGION 79 409 92 409 50 STRAND 11 414 15 COLOUR_TEXT_REGION 11 414 15 414 51 STRAND 39 414 44 COLOUR_TEXT_REGION 39 414 44 414 51 STRAND 98 414 103 COLOUR_TEXT_REGION 98 414 103 414 51 STRAND 109 414 117 COLOUR_TEXT_REGION 109 414 117 414 51 HELIX 23 414 35 COLOUR_TEXT_REGION 23 414 35 414 50 HELIX 79 414 92 COLOUR_TEXT_REGION 79 414 92 414 50 STRAND 39 415 44 COLOUR_TEXT_REGION 39 415 44 415 51 STRAND 97 415 103 COLOUR_TEXT_REGION 97 415 103 415 51 STRAND 109 415 117 COLOUR_TEXT_REGION 109 415 117 415 51 HELIX 23 415 35 COLOUR_TEXT_REGION 23 415 35 415 50 HELIX 79 415 92 COLOUR_TEXT_REGION 79 415 92 415 50