SILENT_MODE
BLOCK_FILE jp_Ktb_fXv.concise.blc
MAX_NSEQ 963
MAX_INPUT_LEN 965
OUTPUT_FILE jp_Ktb_fXv.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 171 952   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 953 171 962 H SPACE
SUB_CHARS 1 953 171 962 E SPACE
SUB_CHARS 1 953 171 962 - SPACE
STRAND 3 956 8
COLOUR_TEXT_REGION 3 956 8 956 51
STRAND 35 956 38
COLOUR_TEXT_REGION 35 956 38 956 51
STRAND 60 956 63
COLOUR_TEXT_REGION 60 956 63 956 51
STRAND 81 956 83
COLOUR_TEXT_REGION 81 956 83 956 51
STRAND 100 956 104
COLOUR_TEXT_REGION 100 956 104 956 51
STRAND 129 956 133
COLOUR_TEXT_REGION 129 956 133 956 51
STRAND 154 956 158
COLOUR_TEXT_REGION 154 956 158 956 51
HELIX 16 956 31
COLOUR_TEXT_REGION 16 956 31 956 50
HELIX 45 956 55
COLOUR_TEXT_REGION 45 956 55 956 50
HELIX 79 956 80
COLOUR_TEXT_REGION 79 956 80 956 50
HELIX 88 956 97
COLOUR_TEXT_REGION 88 956 97 956 50
HELIX 110 956 123
COLOUR_TEXT_REGION 110 956 123 956 50
HELIX 138 956 143
COLOUR_TEXT_REGION 138 956 143 956 50
HELIX 161 956 169
COLOUR_TEXT_REGION 161 956 169 956 50
STRAND 3 961 8
COLOUR_TEXT_REGION 3 961 8 961 51
STRAND 35 961 39
COLOUR_TEXT_REGION 35 961 39 961 51
STRAND 59 961 64
COLOUR_TEXT_REGION 59 961 64 961 51
STRAND 80 961 84
COLOUR_TEXT_REGION 80 961 84 961 51
STRAND 100 961 104
COLOUR_TEXT_REGION 100 961 104 961 51
STRAND 128 961 133
COLOUR_TEXT_REGION 128 961 133 961 51
STRAND 154 961 158
COLOUR_TEXT_REGION 154 961 158 961 51
HELIX 16 961 31
COLOUR_TEXT_REGION 16 961 31 961 50
HELIX 45 961 55
COLOUR_TEXT_REGION 45 961 55 961 50
HELIX 87 961 97
COLOUR_TEXT_REGION 87 961 97 961 50
HELIX 108 961 123
COLOUR_TEXT_REGION 108 961 123 961 50
HELIX 138 961 143
COLOUR_TEXT_REGION 138 961 143 961 50
HELIX 161 961 169
COLOUR_TEXT_REGION 161 961 169 961 50
STRAND 3 962 8
COLOUR_TEXT_REGION 3 962 8 962 51
STRAND 35 962 38
COLOUR_TEXT_REGION 35 962 38 962 51
STRAND 101 962 104
COLOUR_TEXT_REGION 101 962 104 962 51
STRAND 129 962 133
COLOUR_TEXT_REGION 129 962 133 962 51
STRAND 154 962 157
COLOUR_TEXT_REGION 154 962 157 962 51
HELIX 16 962 31
COLOUR_TEXT_REGION 16 962 31 962 50
HELIX 44 962 54
COLOUR_TEXT_REGION 44 962 54 962 50
HELIX 78 962 83
COLOUR_TEXT_REGION 78 962 83 962 50
HELIX 89 962 97
COLOUR_TEXT_REGION 89 962 97 962 50
HELIX 111 962 123
COLOUR_TEXT_REGION 111 962 123 962 50
HELIX 138 962 143
COLOUR_TEXT_REGION 138 962 143 962 50
HELIX 161 962 169
COLOUR_TEXT_REGION 161 962 169 962 50