SILENT_MODE
BLOCK_FILE jp_h4MDDaN.concise.blc
MAX_NSEQ 856
MAX_INPUT_LEN 858
OUTPUT_FILE jp_h4MDDaN.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 112 845   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 846 112 855 H SPACE
SUB_CHARS 1 846 112 855 E SPACE
SUB_CHARS 1 846 112 855 - SPACE
STRAND 6 849 6
COLOUR_TEXT_REGION 6 849 6 849 51
STRAND 11 849 23
COLOUR_TEXT_REGION 11 849 23 849 51
STRAND 37 849 38
COLOUR_TEXT_REGION 37 849 38 849 51
STRAND 42 849 46
COLOUR_TEXT_REGION 42 849 46 849 51
STRAND 50 849 54
COLOUR_TEXT_REGION 50 849 54 849 51
STRAND 89 849 96
COLOUR_TEXT_REGION 89 849 96 849 51
STRAND 101 849 108
COLOUR_TEXT_REGION 101 849 108 849 51
HELIX 27 849 33
COLOUR_TEXT_REGION 27 849 33 849 50
HELIX 65 849 84
COLOUR_TEXT_REGION 65 849 84 849 50
STRAND 4 854 7
COLOUR_TEXT_REGION 4 854 7 854 51
STRAND 9 854 24
COLOUR_TEXT_REGION 9 854 24 854 51
STRAND 37 854 38
COLOUR_TEXT_REGION 37 854 38 854 51
STRAND 42 854 46
COLOUR_TEXT_REGION 42 854 46 854 51
STRAND 49 854 54
COLOUR_TEXT_REGION 49 854 54 854 51
STRAND 89 854 96
COLOUR_TEXT_REGION 89 854 96 854 51
STRAND 101 854 108
COLOUR_TEXT_REGION 101 854 108 854 51
HELIX 27 854 32
COLOUR_TEXT_REGION 27 854 32 854 50
HELIX 66 854 84
COLOUR_TEXT_REGION 66 854 84 854 50
STRAND 12 855 23
COLOUR_TEXT_REGION 12 855 23 855 51
STRAND 41 855 46
COLOUR_TEXT_REGION 41 855 46 855 51
STRAND 50 855 54
COLOUR_TEXT_REGION 50 855 54 855 51
STRAND 88 855 96
COLOUR_TEXT_REGION 88 855 96 855 51
STRAND 101 855 108
COLOUR_TEXT_REGION 101 855 108 855 51
HELIX 27 855 34
COLOUR_TEXT_REGION 27 855 34 855 50
HELIX 64 855 83
COLOUR_TEXT_REGION 64 855 83 855 50