SILENT_MODE
BLOCK_FILE jp_KUn69mh.concise.blc
MAX_NSEQ 791
MAX_INPUT_LEN 793
OUTPUT_FILE jp_KUn69mh.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 118 780   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 781 118 790 H SPACE
SUB_CHARS 1 781 118 790 E SPACE
SUB_CHARS 1 781 118 790 - SPACE
STRAND 5 784 11
COLOUR_TEXT_REGION 5 784 11 784 51
STRAND 54 784 59
COLOUR_TEXT_REGION 54 784 59 784 51
STRAND 79 784 83
COLOUR_TEXT_REGION 79 784 83 784 51
STRAND 95 784 100
COLOUR_TEXT_REGION 95 784 100 784 51
HELIX 18 784 38
COLOUR_TEXT_REGION 18 784 38 784 50
HELIX 41 784 49
COLOUR_TEXT_REGION 41 784 49 784 50
HELIX 62 784 74
COLOUR_TEXT_REGION 62 784 74 784 50
HELIX 107 784 112
COLOUR_TEXT_REGION 107 784 112 784 50
STRAND 4 789 11
COLOUR_TEXT_REGION 4 789 11 789 51
STRAND 54 789 59
COLOUR_TEXT_REGION 54 789 59 789 51
STRAND 79 789 84
COLOUR_TEXT_REGION 79 789 84 789 51
STRAND 95 789 100
COLOUR_TEXT_REGION 95 789 100 789 51
HELIX 18 789 38
COLOUR_TEXT_REGION 18 789 38 789 50
HELIX 41 789 49
COLOUR_TEXT_REGION 41 789 49 789 50
HELIX 62 789 74
COLOUR_TEXT_REGION 62 789 74 789 50
HELIX 108 789 112
COLOUR_TEXT_REGION 108 789 112 789 50
STRAND 5 790 11
COLOUR_TEXT_REGION 5 790 11 790 51
STRAND 53 790 58
COLOUR_TEXT_REGION 53 790 58 790 51
STRAND 79 790 82
COLOUR_TEXT_REGION 79 790 82 790 51
STRAND 95 790 100
COLOUR_TEXT_REGION 95 790 100 790 51
HELIX 20 790 37
COLOUR_TEXT_REGION 20 790 37 790 50
HELIX 41 790 49
COLOUR_TEXT_REGION 41 790 49 790 50
HELIX 62 790 74
COLOUR_TEXT_REGION 62 790 74 790 50
HELIX 106 790 112
COLOUR_TEXT_REGION 106 790 112 790 50