SILENT_MODE
BLOCK_FILE jp_OrPj6Mi.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_OrPj6Mi.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 127 17   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 18 127 27 H SPACE
SUB_CHARS 1 18 127 27 E SPACE
SUB_CHARS 1 18 127 27 - SPACE
STRAND 30 21 35
COLOUR_TEXT_REGION 30 21 35 21 51
STRAND 46 21 51
COLOUR_TEXT_REGION 46 21 51 21 51
STRAND 56 21 59
COLOUR_TEXT_REGION 56 21 59 21 51
STRAND 88 21 93
COLOUR_TEXT_REGION 88 21 93 21 51
HELIX 10 21 23
COLOUR_TEXT_REGION 10 21 23 21 50
HELIX 69 21 83
COLOUR_TEXT_REGION 69 21 83 21 50
HELIX 97 21 103
COLOUR_TEXT_REGION 97 21 103 21 50
HELIX 107 21 117
COLOUR_TEXT_REGION 107 21 117 21 50
STRAND 4 26 4
COLOUR_TEXT_REGION 4 26 4 26 51
STRAND 30 26 35
COLOUR_TEXT_REGION 30 26 35 26 51
STRAND 46 26 51
COLOUR_TEXT_REGION 46 26 51 26 51
STRAND 56 26 59
COLOUR_TEXT_REGION 56 26 59 26 51
STRAND 90 26 93
COLOUR_TEXT_REGION 90 26 93 26 51
STRAND 125 26 125
COLOUR_TEXT_REGION 125 26 125 26 51
HELIX 10 26 23
COLOUR_TEXT_REGION 10 26 23 26 50
HELIX 69 26 83
COLOUR_TEXT_REGION 69 26 83 26 50
HELIX 97 26 103
COLOUR_TEXT_REGION 97 26 103 26 50
HELIX 107 26 117
COLOUR_TEXT_REGION 107 26 117 26 50
STRAND 30 27 35
COLOUR_TEXT_REGION 30 27 35 27 51
STRAND 46 27 51
COLOUR_TEXT_REGION 46 27 51 27 51
STRAND 56 27 60
COLOUR_TEXT_REGION 56 27 60 27 51
STRAND 88 27 92
COLOUR_TEXT_REGION 88 27 92 27 51
HELIX 10 27 22
COLOUR_TEXT_REGION 10 27 22 27 50
HELIX 69 27 83
COLOUR_TEXT_REGION 69 27 83 27 50
HELIX 99 27 102
COLOUR_TEXT_REGION 99 27 102 27 50
HELIX 107 27 117
COLOUR_TEXT_REGION 107 27 117 27 50