QUERY                  : MVRVGMRAAPRVSLEALKAALGGLKLSEAKVYLITDWQDKRDQARYALLLHTGKKDLLVPDAFGPAFPGGEEALSELVGLLLAQGARRFYEAVVSPGEMTALLDLPPEELLKRVMAIANPTDPGIYL : QUERY 
UniRef90_D7BAE0        : MEVLGVRGAPKQTLAALMEALKGARFPDLIVTFVTDWQDQRKKARYAVFVRGGKHPLLTMDAFGPAFPEGDRALVELVQWLQDKGVRKWYESVIPPSEYAALFEIDPDDVYRQLAANANPSDPALY- : UniRef90_D7BAE0
UniRef90_F2NQS8        : MEIIGFRGAPEMTLKALQDALKNTHFPSLIVTLVTDWQDQRDRARYALFIRGAKTPILTEDAFGPAFGPGRRALAEAVAWLEQKGVRKFYEAVLPPSEYQGLFDLEPETAYRRLVASANPTDTAIY- : UniRef90_F2NQS8
UniRef90_D3PL26        : MEIVGLRGAPQETLRALKEALKGVSFPEALAIYITDWQDQRAQARFALFVRQGKHRVLSRDAFGPRFGEGDAALKDLTLWLIERGVTDFKEAVVAPSEFAALFELEAEEAQKLIMASANPTDPMLYI : UniRef90_D3PL26
UniRef90_UPI00037F0A90 : ---VGLRAAPKETLEDLQQALRSASFNRLVVTLVTDWQDQRKQARYAVFARGGKTPVLSLDAFGPAFGPGEEALAALVQWLREKGVTHFYEAVLPPSEYSALFLEDPEEVYKRLVAAANPIDPALYL : UniRef90_UPI00037F0A90
UniRef90_UPI00037BFDFE : ---LGVAGAPQETWGAVQAHLEGSVRAGGRLILVTDRQGDRLNAAYAALLVQGTQAVIAAPAFGPRYGPGAEALAELVNWTQERN-WPVRETVLNPSDFVRVLAEPDAEEVGRLIAASTPSDPGIY- : UniRef90_UPI00037BFDFE
UniRef90_UPI000369DE52 : ----GVPGAPLETLHAILSRLEGMNRAGGRLILISDRQGDRPATRYAALLTLGDEALITAPAFGPEYGAGAQALADLTRWAQGRG-WPVRETILPPPDFVRVLAEPDEDEVARLIAASNPSDPAIY- : UniRef90_UPI000369DE52
UniRef90_L0A4M4        : -EPLGVVGAPNETLRILERTFADIDLTGGAITFVTESQGQRANARYGAVIEAAGKTYVIVEAFGGQFPGGVEGLQALARWAQSSGIQTYRESILSTYDFNRVLREPDEGEIQQLIVSANPSDVNIYL : UniRef90_L0A4M4
UniRef90_E4U970        : MERIGFKGLPEETLEQLKPRLKKLHFPSLKVVLVTDRQGRRERARYRVFLVGGKHALLTEDAFGPAYGAGERALAELVQLLRKGGAYNFKEAVLPPDVYAALDAMDEAAARERLLANANPADPRLY- : UniRef90_E4U970
UniRef90_K7RFT1        : MERIGLRAAPRLSLEALKEALRGLKLPETQVYLITDWQDRRDKARYALLLH-GKKDLLIPDAFGPAFPGGEEALAEAIRLLEAGGARKFYEAVVAPGELTALLSLPPEELLKRVQAVANPADPGLY- : UniRef90_K7RFT1
UniRef90_Q1IWR9        : -------------MQAVLAHLEKIEAPEGRLVLITDREDERLQARYGALLTFGGEALVTAPAFGPAYPEGARALAELTRWAQERG-WPVRETVLSASDFVRVLAEPDADEVRRLLAASNPSDPAIY- : UniRef90_Q1IWR9
UniRef90_UPI0003463076 : ---LGVPAAPLETWQAMQTRLDDADLTGARLILITDRQGERSQAGYAALVLLGQTAVISAPAFGPRYAAGRAALAELVNWADGAGL-PTAETILSGGDVQRVLAEPDADEVANLIAASNPADPAIY- : UniRef90_UPI0003463076
UniRef90_E6RGA2        : ---LGVPGAPLETLNAALSGAQTLNLNGGRLLLVTDWQGHRPLARYAVLLPASGEPLVLTATFGPRFPTGAQALAELVTWAQEQGLV-LRETVLSPSAFMQVLEEPDHEEIRHLVAASNPTDPGIY- : UniRef90_E6RGA2
UniRef90_UPI0003B60A8C : ---IGLPGASLETLNEVRSRFQGVDLQGGHLLMVTDTQGHREGARYGAVVVGVDRAVVISPSFGPRFAAGQEALAGLADWAAGAGLV-LRETVLPAGDFVRVLEEPDTREVNRLVAASNPVDAGIY- : UniRef90_UPI0003B60A8C

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121---- :
OrigSeq                : MVRVGMRAAPRVSLEALKAALGGLKLSEAKVYLITDWQDKRDQARYALLLHTGKKDLLVPDAFGPAFPGGEEALSELVGLLLAQGARRFYEAVVSPGEMTALLDLPPEELLKRVMAIANPTDPGIYL : OrigSeq

Jnet                   : ---------HHHHHHHHHHHHHH------EEEEEE----------EEEEEE----EEEE---------HHHHHHHHHHHHHHH----EEEEEE---HHHHHHH---HHHHHHHHHHH---------- : Jnet
jhmm                   : ---E-----HHHHHHHHHHHHHH------EEEEEE----------EEEEEE----EEEE---------HHHHHHHHHHHHHHH------EEEE---HHHHHHH---HHHHHHHHHHH-------E-- : jhmm
jpssm                  : ---------HHHHHHHHHHHHH-------EEEEEE----------EEEEEE----EEEEE--------HHHHHHHHHHHHHHH----EEEEE------HHHH----HHHHHHHHHHH---------- : jpssm

Lupas 14               : -------------cccccccccccccc---------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---BBB-BBB--BB--B--BB--B-B--BBBBBBBB-------BBBBBBB-BB---BBBB-BBBB-B--B--BB--BB-BB----BB-BBBBBBBB--B-BBB-B----BB--BBBBBBB-BB-BBB : Jnet_25
Jnet_5                 : -----B-------B--B---B---------B-BBB--------B-B-BBB-------BB---B------B--BB--BB--B-------B---BB----B--B-----------B-BBB------B-- : Jnet_5
Jnet_0                 : ----------------B----------------B-------------B-B----------------------B---B---B----------B--------------------------------B-- : Jnet_0
Jnet Rel               : 9863888751458999999872178887448888446777436715899855884688615778775014899999999997537860343316761345532465578888887634788774027 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.