SILENT_MODE BLOCK_FILE jp_2y8pqc1.concise.blc MAX_NSEQ 158 MAX_INPUT_LEN 160 OUTPUT_FILE jp_2y8pqc1.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 168 147 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 148 168 157 H SPACE SUB_CHARS 1 148 168 157 E SPACE SUB_CHARS 1 148 168 157 - SPACE STRAND 95 151 96 COLOUR_TEXT_REGION 95 151 96 151 51 HELIX 9 151 24 COLOUR_TEXT_REGION 9 151 24 151 50 HELIX 33 151 42 COLOUR_TEXT_REGION 33 151 42 151 50 HELIX 62 151 83 COLOUR_TEXT_REGION 62 151 83 151 50 HELIX 105 151 117 COLOUR_TEXT_REGION 105 151 117 151 50 HELIX 138 151 149 COLOUR_TEXT_REGION 138 151 149 151 50 HELIX 159 151 166 COLOUR_TEXT_REGION 159 151 166 151 50 STRAND 95 156 97 COLOUR_TEXT_REGION 95 156 97 156 51 HELIX 9 156 24 COLOUR_TEXT_REGION 9 156 24 156 50 HELIX 33 156 41 COLOUR_TEXT_REGION 33 156 41 156 50 HELIX 62 156 85 COLOUR_TEXT_REGION 62 156 85 156 50 HELIX 105 156 116 COLOUR_TEXT_REGION 105 156 116 156 50 HELIX 138 156 149 COLOUR_TEXT_REGION 138 156 149 156 50 HELIX 159 156 166 COLOUR_TEXT_REGION 159 156 166 156 50 HELIX 9 157 24 COLOUR_TEXT_REGION 9 157 24 157 50 HELIX 31 157 42 COLOUR_TEXT_REGION 31 157 42 157 50 HELIX 60 157 82 COLOUR_TEXT_REGION 60 157 82 157 50 HELIX 104 157 117 COLOUR_TEXT_REGION 104 157 117 157 50 HELIX 138 157 150 COLOUR_TEXT_REGION 138 157 150 157 50 HELIX 159 157 166 COLOUR_TEXT_REGION 159 157 166 157 50