SILENT_MODE BLOCK_FILE jp_06Vj_OF.concise.blc MAX_NSEQ 958 MAX_INPUT_LEN 960 OUTPUT_FILE jp_06Vj_OF.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 187 947 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 948 187 957 H SPACE SUB_CHARS 1 948 187 957 E SPACE SUB_CHARS 1 948 187 957 - SPACE STRAND 2 951 7 COLOUR_TEXT_REGION 2 951 7 951 51 STRAND 34 951 37 COLOUR_TEXT_REGION 34 951 37 951 51 STRAND 70 951 73 COLOUR_TEXT_REGION 70 951 73 951 51 STRAND 90 951 95 COLOUR_TEXT_REGION 90 951 95 951 51 STRAND 108 951 112 COLOUR_TEXT_REGION 108 951 112 951 51 HELIX 13 951 28 COLOUR_TEXT_REGION 13 951 28 951 50 HELIX 45 951 50 COLOUR_TEXT_REGION 45 951 50 951 50 HELIX 118 951 128 COLOUR_TEXT_REGION 118 951 128 951 50 HELIX 135 951 148 COLOUR_TEXT_REGION 135 951 148 951 50 HELIX 159 951 171 COLOUR_TEXT_REGION 159 951 171 951 50 HELIX 176 951 185 COLOUR_TEXT_REGION 176 951 185 951 50 STRAND 2 956 7 COLOUR_TEXT_REGION 2 956 7 956 51 STRAND 34 956 37 COLOUR_TEXT_REGION 34 956 37 956 51 STRAND 69 956 74 COLOUR_TEXT_REGION 69 956 74 956 51 STRAND 90 956 95 COLOUR_TEXT_REGION 90 956 95 956 51 STRAND 108 956 112 COLOUR_TEXT_REGION 108 956 112 956 51 HELIX 13 956 28 COLOUR_TEXT_REGION 13 956 28 956 50 HELIX 45 956 48 COLOUR_TEXT_REGION 45 956 48 956 50 HELIX 118 956 128 COLOUR_TEXT_REGION 118 956 128 956 50 HELIX 135 956 147 COLOUR_TEXT_REGION 135 956 147 956 50 HELIX 159 956 171 COLOUR_TEXT_REGION 159 956 171 956 50 HELIX 176 956 185 COLOUR_TEXT_REGION 176 956 185 956 50 STRAND 2 957 7 COLOUR_TEXT_REGION 2 957 7 957 51 STRAND 33 957 37 COLOUR_TEXT_REGION 33 957 37 957 51 STRAND 89 957 94 COLOUR_TEXT_REGION 89 957 94 957 51 STRAND 108 957 112 COLOUR_TEXT_REGION 108 957 112 957 51 HELIX 14 957 28 COLOUR_TEXT_REGION 14 957 28 957 50 HELIX 45 957 50 COLOUR_TEXT_REGION 45 957 50 957 50 HELIX 118 957 128 COLOUR_TEXT_REGION 118 957 128 957 50 HELIX 135 957 148 COLOUR_TEXT_REGION 135 957 148 957 50 HELIX 159 957 171 COLOUR_TEXT_REGION 159 957 171 957 50 HELIX 176 957 185 COLOUR_TEXT_REGION 176 957 185 957 50