SILENT_MODE
BLOCK_FILE jp_5DiFjzL.concise.blc
MAX_NSEQ 783
MAX_INPUT_LEN 785
OUTPUT_FILE jp_5DiFjzL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 184 772   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 773 184 782 H SPACE
SUB_CHARS 1 773 184 782 E SPACE
SUB_CHARS 1 773 184 782 - SPACE
STRAND 39 776 43
COLOUR_TEXT_REGION 39 776 43 776 51
STRAND 53 776 58
COLOUR_TEXT_REGION 53 776 58 776 51
STRAND 63 776 68
COLOUR_TEXT_REGION 63 776 68 776 51
STRAND 96 776 100
COLOUR_TEXT_REGION 96 776 100 776 51
HELIX 2 776 27
COLOUR_TEXT_REGION 2 776 27 776 50
HELIX 74 776 83
COLOUR_TEXT_REGION 74 776 83 776 50
HELIX 106 776 142
COLOUR_TEXT_REGION 106 776 142 776 50
HELIX 149 776 181
COLOUR_TEXT_REGION 149 776 181 776 50
STRAND 27 781 27
COLOUR_TEXT_REGION 27 781 27 781 51
STRAND 39 781 43
COLOUR_TEXT_REGION 39 781 43 781 51
STRAND 56 781 57
COLOUR_TEXT_REGION 56 781 57 781 51
STRAND 63 781 68
COLOUR_TEXT_REGION 63 781 68 781 51
STRAND 96 781 100
COLOUR_TEXT_REGION 96 781 100 781 51
HELIX 2 781 26
COLOUR_TEXT_REGION 2 781 26 781 50
HELIX 50 781 53
COLOUR_TEXT_REGION 50 781 53 781 50
HELIX 74 781 83
COLOUR_TEXT_REGION 74 781 83 781 50
HELIX 106 781 143
COLOUR_TEXT_REGION 106 781 143 781 50
HELIX 149 781 182
COLOUR_TEXT_REGION 149 781 182 781 50
STRAND 39 782 43
COLOUR_TEXT_REGION 39 782 43 782 51
STRAND 52 782 58
COLOUR_TEXT_REGION 52 782 58 782 51
STRAND 63 782 67
COLOUR_TEXT_REGION 63 782 67 782 51
STRAND 96 782 100
COLOUR_TEXT_REGION 96 782 100 782 51
HELIX 2 782 27
COLOUR_TEXT_REGION 2 782 27 782 50
HELIX 74 782 83
COLOUR_TEXT_REGION 74 782 83 782 50
HELIX 106 782 139
COLOUR_TEXT_REGION 106 782 139 782 50
HELIX 149 782 181
COLOUR_TEXT_REGION 149 782 181 782 50