SILENT_MODE BLOCK_FILE jp_rgmNeIB.concise.blc MAX_NSEQ 1091 MAX_INPUT_LEN 1093 OUTPUT_FILE jp_rgmNeIB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 176 1080 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1081 176 1090 H SPACE SUB_CHARS 1 1081 176 1090 E SPACE SUB_CHARS 1 1081 176 1090 - SPACE STRAND 2 1084 6 COLOUR_TEXT_REGION 2 1084 6 1084 51 STRAND 11 1084 18 COLOUR_TEXT_REGION 11 1084 18 1084 51 STRAND 22 1084 37 COLOUR_TEXT_REGION 22 1084 37 1084 51 STRAND 45 1084 51 COLOUR_TEXT_REGION 45 1084 51 1084 51 STRAND 79 1084 84 COLOUR_TEXT_REGION 79 1084 84 1084 51 STRAND 87 1084 89 COLOUR_TEXT_REGION 87 1084 89 1084 51 STRAND 95 1084 104 COLOUR_TEXT_REGION 95 1084 104 1084 51 STRAND 110 1084 118 COLOUR_TEXT_REGION 110 1084 118 1084 51 STRAND 128 1084 140 COLOUR_TEXT_REGION 128 1084 140 1084 51 STRAND 160 1084 170 COLOUR_TEXT_REGION 160 1084 170 1084 51 HELIX 60 1084 66 COLOUR_TEXT_REGION 60 1084 66 1084 50 STRAND 2 1089 6 COLOUR_TEXT_REGION 2 1089 6 1089 51 STRAND 11 1089 19 COLOUR_TEXT_REGION 11 1089 19 1089 51 STRAND 22 1089 37 COLOUR_TEXT_REGION 22 1089 37 1089 51 STRAND 45 1089 51 COLOUR_TEXT_REGION 45 1089 51 1089 51 STRAND 79 1089 84 COLOUR_TEXT_REGION 79 1089 84 1089 51 STRAND 87 1089 89 COLOUR_TEXT_REGION 87 1089 89 1089 51 STRAND 95 1089 103 COLOUR_TEXT_REGION 95 1089 103 1089 51 STRAND 106 1089 118 COLOUR_TEXT_REGION 106 1089 118 1089 51 STRAND 128 1089 140 COLOUR_TEXT_REGION 128 1089 140 1089 51 STRAND 160 1089 170 COLOUR_TEXT_REGION 160 1089 170 1089 51 HELIX 60 1089 66 COLOUR_TEXT_REGION 60 1089 66 1089 50 STRAND 2 1090 5 COLOUR_TEXT_REGION 2 1090 5 1090 51 STRAND 11 1090 18 COLOUR_TEXT_REGION 11 1090 18 1090 51 STRAND 23 1090 28 COLOUR_TEXT_REGION 23 1090 28 1090 51 STRAND 32 1090 37 COLOUR_TEXT_REGION 32 1090 37 1090 51 STRAND 44 1090 50 COLOUR_TEXT_REGION 44 1090 50 1090 51 STRAND 79 1090 84 COLOUR_TEXT_REGION 79 1090 84 1090 51 STRAND 88 1090 88 COLOUR_TEXT_REGION 88 1090 88 1090 51 STRAND 95 1090 104 COLOUR_TEXT_REGION 95 1090 104 1090 51 STRAND 110 1090 118 COLOUR_TEXT_REGION 110 1090 118 1090 51 STRAND 127 1090 141 COLOUR_TEXT_REGION 127 1090 141 1090 51 STRAND 160 1090 171 COLOUR_TEXT_REGION 160 1090 171 1090 51 HELIX 64 1090 64 COLOUR_TEXT_REGION 64 1090 64 1090 50