SILENT_MODE BLOCK_FILE jp_Dvryc2u.concise.blc MAX_NSEQ 524 MAX_INPUT_LEN 526 OUTPUT_FILE jp_Dvryc2u.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 267 513 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 514 267 523 H SPACE SUB_CHARS 1 514 267 523 E SPACE SUB_CHARS 1 514 267 523 - SPACE STRAND 9 517 13 COLOUR_TEXT_REGION 9 517 13 517 51 STRAND 42 517 44 COLOUR_TEXT_REGION 42 517 44 517 51 STRAND 71 517 75 COLOUR_TEXT_REGION 71 517 75 517 51 STRAND 78 517 78 COLOUR_TEXT_REGION 78 517 78 517 51 STRAND 86 517 89 COLOUR_TEXT_REGION 86 517 89 517 51 STRAND 107 517 111 COLOUR_TEXT_REGION 107 517 111 517 51 STRAND 143 517 147 COLOUR_TEXT_REGION 143 517 147 517 51 STRAND 181 517 182 COLOUR_TEXT_REGION 181 517 182 517 51 STRAND 202 517 203 COLOUR_TEXT_REGION 202 517 203 517 51 STRAND 215 517 219 COLOUR_TEXT_REGION 215 517 219 517 51 STRAND 227 517 227 COLOUR_TEXT_REGION 227 517 227 517 51 STRAND 234 517 236 COLOUR_TEXT_REGION 234 517 236 517 51 STRAND 248 517 252 COLOUR_TEXT_REGION 248 517 252 517 51 HELIX 22 517 26 COLOUR_TEXT_REGION 22 517 26 517 50 HELIX 32 517 38 COLOUR_TEXT_REGION 32 517 38 517 50 HELIX 53 517 64 COLOUR_TEXT_REGION 53 517 64 517 50 HELIX 93 517 103 COLOUR_TEXT_REGION 93 517 103 517 50 HELIX 154 517 166 COLOUR_TEXT_REGION 154 517 166 517 50 STRAND 9 522 13 COLOUR_TEXT_REGION 9 522 13 522 51 STRAND 22 522 24 COLOUR_TEXT_REGION 22 522 24 522 51 STRAND 42 522 44 COLOUR_TEXT_REGION 42 522 44 522 51 STRAND 71 522 78 COLOUR_TEXT_REGION 71 522 78 522 51 STRAND 86 522 89 COLOUR_TEXT_REGION 86 522 89 522 51 STRAND 107 522 112 COLOUR_TEXT_REGION 107 522 112 522 51 STRAND 131 522 132 COLOUR_TEXT_REGION 131 522 132 522 51 STRAND 143 522 147 COLOUR_TEXT_REGION 143 522 147 522 51 STRAND 181 522 182 COLOUR_TEXT_REGION 181 522 182 522 51 STRAND 201 522 203 COLOUR_TEXT_REGION 201 522 203 522 51 STRAND 215 522 217 COLOUR_TEXT_REGION 215 522 217 522 51 STRAND 234 522 236 COLOUR_TEXT_REGION 234 522 236 522 51 STRAND 248 522 252 COLOUR_TEXT_REGION 248 522 252 522 51 HELIX 25 522 26 COLOUR_TEXT_REGION 25 522 26 522 50 HELIX 32 522 39 COLOUR_TEXT_REGION 32 522 39 522 50 HELIX 53 522 64 COLOUR_TEXT_REGION 53 522 64 522 50 HELIX 93 522 103 COLOUR_TEXT_REGION 93 522 103 522 50 HELIX 154 522 166 COLOUR_TEXT_REGION 154 522 166 522 50 HELIX 218 522 218 COLOUR_TEXT_REGION 218 522 218 522 50 STRAND 8 523 13 COLOUR_TEXT_REGION 8 523 13 523 51 STRAND 41 523 44 COLOUR_TEXT_REGION 41 523 44 523 51 STRAND 70 523 73 COLOUR_TEXT_REGION 70 523 73 523 51 STRAND 86 523 89 COLOUR_TEXT_REGION 86 523 89 523 51 STRAND 107 523 110 COLOUR_TEXT_REGION 107 523 110 523 51 STRAND 121 523 122 COLOUR_TEXT_REGION 121 523 122 523 51 STRAND 144 523 148 COLOUR_TEXT_REGION 144 523 148 523 51 STRAND 180 523 182 COLOUR_TEXT_REGION 180 523 182 523 51 STRAND 215 523 219 COLOUR_TEXT_REGION 215 523 219 523 51 STRAND 226 523 228 COLOUR_TEXT_REGION 226 523 228 523 51 STRAND 234 523 236 COLOUR_TEXT_REGION 234 523 236 523 51 STRAND 250 523 251 COLOUR_TEXT_REGION 250 523 251 523 51 HELIX 21 523 26 COLOUR_TEXT_REGION 21 523 26 523 50 HELIX 32 523 37 COLOUR_TEXT_REGION 32 523 37 523 50 HELIX 53 523 64 COLOUR_TEXT_REGION 53 523 64 523 50 HELIX 94 523 103 COLOUR_TEXT_REGION 94 523 103 523 50 HELIX 114 523 116 COLOUR_TEXT_REGION 114 523 116 523 50 HELIX 154 523 166 COLOUR_TEXT_REGION 154 523 166 523 50 HELIX 202 523 204 COLOUR_TEXT_REGION 202 523 204 523 50