SILENT_MODE BLOCK_FILE jp_P4fxHNf.concise.blc MAX_NSEQ 160 MAX_INPUT_LEN 162 OUTPUT_FILE jp_P4fxHNf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 163 149 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 150 163 159 H SPACE SUB_CHARS 1 150 163 159 E SPACE SUB_CHARS 1 150 163 159 - SPACE STRAND 3 153 9 COLOUR_TEXT_REGION 3 153 9 153 51 STRAND 15 153 21 COLOUR_TEXT_REGION 15 153 21 153 51 STRAND 43 153 48 COLOUR_TEXT_REGION 43 153 48 153 51 STRAND 55 153 59 COLOUR_TEXT_REGION 55 153 59 153 51 STRAND 82 153 87 COLOUR_TEXT_REGION 82 153 87 153 51 STRAND 106 153 110 COLOUR_TEXT_REGION 106 153 110 153 51 STRAND 116 153 123 COLOUR_TEXT_REGION 116 153 123 153 51 STRAND 129 153 135 COLOUR_TEXT_REGION 129 153 135 153 51 HELIX 25 153 38 COLOUR_TEXT_REGION 25 153 38 153 50 HELIX 63 153 77 COLOUR_TEXT_REGION 63 153 77 153 50 HELIX 95 153 100 COLOUR_TEXT_REGION 95 153 100 153 50 HELIX 105 153 105 COLOUR_TEXT_REGION 105 153 105 153 50 HELIX 145 153 158 COLOUR_TEXT_REGION 145 153 158 153 50 STRAND 3 158 10 COLOUR_TEXT_REGION 3 158 10 158 51 STRAND 15 158 21 COLOUR_TEXT_REGION 15 158 21 158 51 STRAND 25 158 25 COLOUR_TEXT_REGION 25 158 25 158 51 STRAND 44 158 48 COLOUR_TEXT_REGION 44 158 48 158 51 STRAND 55 158 59 COLOUR_TEXT_REGION 55 158 59 158 51 STRAND 82 158 87 COLOUR_TEXT_REGION 82 158 87 158 51 STRAND 106 158 110 COLOUR_TEXT_REGION 106 158 110 158 51 STRAND 116 158 122 COLOUR_TEXT_REGION 116 158 122 158 51 STRAND 129 158 135 COLOUR_TEXT_REGION 129 158 135 158 51 STRAND 142 158 143 COLOUR_TEXT_REGION 142 158 143 158 51 HELIX 26 158 37 COLOUR_TEXT_REGION 26 158 37 158 50 HELIX 63 158 77 COLOUR_TEXT_REGION 63 158 77 158 50 HELIX 95 158 100 COLOUR_TEXT_REGION 95 158 100 158 50 HELIX 105 158 105 COLOUR_TEXT_REGION 105 158 105 158 50 HELIX 145 158 158 COLOUR_TEXT_REGION 145 158 158 158 50 STRAND 3 159 8 COLOUR_TEXT_REGION 3 159 8 159 51 STRAND 16 159 21 COLOUR_TEXT_REGION 16 159 21 159 51 STRAND 43 159 48 COLOUR_TEXT_REGION 43 159 48 159 51 STRAND 55 159 59 COLOUR_TEXT_REGION 55 159 59 159 51 STRAND 82 159 87 COLOUR_TEXT_REGION 82 159 87 159 51 STRAND 105 159 110 COLOUR_TEXT_REGION 105 159 110 159 51 STRAND 116 159 123 COLOUR_TEXT_REGION 116 159 123 159 51 STRAND 129 159 134 COLOUR_TEXT_REGION 129 159 134 159 51 HELIX 24 159 39 COLOUR_TEXT_REGION 24 159 39 159 50 HELIX 63 159 77 COLOUR_TEXT_REGION 63 159 77 159 50 HELIX 95 159 100 COLOUR_TEXT_REGION 95 159 100 159 50 HELIX 145 159 158 COLOUR_TEXT_REGION 145 159 158 159 50