SILENT_MODE
BLOCK_FILE jp_x0q5upH.concise.blc
MAX_NSEQ 1081
MAX_INPUT_LEN 1083
OUTPUT_FILE jp_x0q5upH.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 1070   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1071 95 1080 H SPACE
SUB_CHARS 1 1071 95 1080 E SPACE
SUB_CHARS 1 1071 95 1080 - SPACE
STRAND 86 1074 91
COLOUR_TEXT_REGION 86 1074 91 1074 51
HELIX 3 1074 34
COLOUR_TEXT_REGION 3 1074 34 1074 50
HELIX 40 1074 44
COLOUR_TEXT_REGION 40 1074 44 1074 50
HELIX 48 1074 60
COLOUR_TEXT_REGION 48 1074 60 1074 50
HELIX 64 1074 75
COLOUR_TEXT_REGION 64 1074 75 1074 50
STRAND 86 1079 91
COLOUR_TEXT_REGION 86 1079 91 1079 51
HELIX 3 1079 33
COLOUR_TEXT_REGION 3 1079 33 1079 50
HELIX 40 1079 44
COLOUR_TEXT_REGION 40 1079 44 1079 50
HELIX 48 1079 61
COLOUR_TEXT_REGION 48 1079 61 1079 50
HELIX 64 1079 75
COLOUR_TEXT_REGION 64 1079 75 1079 50
STRAND 85 1080 91
COLOUR_TEXT_REGION 85 1080 91 1080 51
HELIX 3 1080 34
COLOUR_TEXT_REGION 3 1080 34 1080 50
HELIX 40 1080 44
COLOUR_TEXT_REGION 40 1080 44 1080 50
HELIX 48 1080 60
COLOUR_TEXT_REGION 48 1080 60 1080 50
HELIX 64 1080 75
COLOUR_TEXT_REGION 64 1080 75 1080 50