SILENT_MODE
BLOCK_FILE jp_rTMYu91.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_rTMYu91.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 159 14   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 15 159 24 H SPACE
SUB_CHARS 1 15 159 24 E SPACE
SUB_CHARS 1 15 159 24 - SPACE
STRAND 39 18 42
COLOUR_TEXT_REGION 39 18 42 18 51
STRAND 44 18 46
COLOUR_TEXT_REGION 44 18 46 18 51
HELIX 2 18 14
COLOUR_TEXT_REGION 2 18 14 18 50
HELIX 18 18 27
COLOUR_TEXT_REGION 18 18 27 18 50
HELIX 51 18 60
COLOUR_TEXT_REGION 51 18 60 18 50
HELIX 71 18 81
COLOUR_TEXT_REGION 71 18 81 18 50
HELIX 86 18 99
COLOUR_TEXT_REGION 86 18 99 18 50
HELIX 103 18 112
COLOUR_TEXT_REGION 103 18 112 18 50
HELIX 119 18 146
COLOUR_TEXT_REGION 119 18 146 18 50
HELIX 148 18 156
COLOUR_TEXT_REGION 148 18 156 18 50
STRAND 38 23 41
COLOUR_TEXT_REGION 38 23 41 23 51
STRAND 45 23 47
COLOUR_TEXT_REGION 45 23 47 23 51
HELIX 2 23 14
COLOUR_TEXT_REGION 2 23 14 23 50
HELIX 18 23 28
COLOUR_TEXT_REGION 18 23 28 23 50
HELIX 51 23 60
COLOUR_TEXT_REGION 51 23 60 23 50
HELIX 71 23 81
COLOUR_TEXT_REGION 71 23 81 23 50
HELIX 87 23 100
COLOUR_TEXT_REGION 87 23 100 23 50
HELIX 104 23 112
COLOUR_TEXT_REGION 104 23 112 23 50
HELIX 119 23 146
COLOUR_TEXT_REGION 119 23 146 23 50
HELIX 148 23 157
COLOUR_TEXT_REGION 148 23 157 23 50
STRAND 39 24 46
COLOUR_TEXT_REGION 39 24 46 24 51
HELIX 2 24 14
COLOUR_TEXT_REGION 2 24 14 24 50
HELIX 18 24 27
COLOUR_TEXT_REGION 18 24 27 24 50
HELIX 51 24 60
COLOUR_TEXT_REGION 51 24 60 24 50
HELIX 72 24 81
COLOUR_TEXT_REGION 72 24 81 24 50
HELIX 86 24 99
COLOUR_TEXT_REGION 86 24 99 24 50
HELIX 102 24 112
COLOUR_TEXT_REGION 102 24 112 24 50
HELIX 119 24 131
COLOUR_TEXT_REGION 119 24 131 24 50
HELIX 134 24 146
COLOUR_TEXT_REGION 134 24 146 24 50
HELIX 148 24 156
COLOUR_TEXT_REGION 148 24 156 24 50