SILENT_MODE BLOCK_FILE jp_pz2bWSI.concise.blc MAX_NSEQ 945 MAX_INPUT_LEN 947 OUTPUT_FILE jp_pz2bWSI.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 214 934 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 935 214 944 H SPACE SUB_CHARS 1 935 214 944 E SPACE SUB_CHARS 1 935 214 944 - SPACE STRAND 0 938 6 COLOUR_TEXT_REGION 0 938 6 938 51 STRAND 24 938 28 COLOUR_TEXT_REGION 24 938 28 938 51 STRAND 91 938 96 COLOUR_TEXT_REGION 91 938 96 938 51 STRAND 130 938 135 COLOUR_TEXT_REGION 130 938 135 938 51 STRAND 152 938 155 COLOUR_TEXT_REGION 152 938 155 938 51 STRAND 168 938 170 COLOUR_TEXT_REGION 168 938 170 938 51 STRAND 180 938 183 COLOUR_TEXT_REGION 180 938 183 938 51 HELIX 62 938 66 COLOUR_TEXT_REGION 62 938 66 938 50 HELIX 81 938 86 COLOUR_TEXT_REGION 81 938 86 938 50 HELIX 116 938 125 COLOUR_TEXT_REGION 116 938 125 938 50 HELIX 162 938 167 COLOUR_TEXT_REGION 162 938 167 938 50 STRAND 0 943 6 COLOUR_TEXT_REGION 0 943 6 943 51 STRAND 24 943 28 COLOUR_TEXT_REGION 24 943 28 943 51 STRAND 63 943 65 COLOUR_TEXT_REGION 63 943 65 943 51 STRAND 91 943 97 COLOUR_TEXT_REGION 91 943 97 943 51 STRAND 130 943 135 COLOUR_TEXT_REGION 130 943 135 943 51 STRAND 152 943 155 COLOUR_TEXT_REGION 152 943 155 943 51 STRAND 168 943 171 COLOUR_TEXT_REGION 168 943 171 943 51 STRAND 182 943 183 COLOUR_TEXT_REGION 182 943 183 943 51 HELIX 81 943 87 COLOUR_TEXT_REGION 81 943 87 943 50 HELIX 115 943 126 COLOUR_TEXT_REGION 115 943 126 943 50 HELIX 162 943 167 COLOUR_TEXT_REGION 162 943 167 943 50 STRAND 2 944 5 COLOUR_TEXT_REGION 2 944 5 944 51 STRAND 24 944 28 COLOUR_TEXT_REGION 24 944 28 944 51 STRAND 43 944 45 COLOUR_TEXT_REGION 43 944 45 944 51 STRAND 91 944 94 COLOUR_TEXT_REGION 91 944 94 944 51 STRAND 119 944 119 COLOUR_TEXT_REGION 119 944 119 944 51 STRAND 130 944 135 COLOUR_TEXT_REGION 130 944 135 944 51 STRAND 179 944 183 COLOUR_TEXT_REGION 179 944 183 944 51 STRAND 202 944 203 COLOUR_TEXT_REGION 202 944 203 944 51 HELIX 60 944 67 COLOUR_TEXT_REGION 60 944 67 944 50 HELIX 82 944 82 COLOUR_TEXT_REGION 82 944 82 944 50 HELIX 84 944 84 COLOUR_TEXT_REGION 84 944 84 944 50 HELIX 120 944 124 COLOUR_TEXT_REGION 120 944 124 944 50 HELIX 164 944 169 COLOUR_TEXT_REGION 164 944 169 944 50