SILENT_MODE BLOCK_FILE jp_wFUuNtq.concise.blc MAX_NSEQ 701 MAX_INPUT_LEN 703 OUTPUT_FILE jp_wFUuNtq.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 119 690 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 691 119 700 H SPACE SUB_CHARS 1 691 119 700 E SPACE SUB_CHARS 1 691 119 700 - SPACE STRAND 57 694 63 COLOUR_TEXT_REGION 57 694 63 694 51 STRAND 71 694 78 COLOUR_TEXT_REGION 71 694 78 694 51 STRAND 90 694 95 COLOUR_TEXT_REGION 90 694 95 694 51 STRAND 101 694 106 COLOUR_TEXT_REGION 101 694 106 694 51 HELIX 3 694 15 COLOUR_TEXT_REGION 3 694 15 694 50 HELIX 19 694 28 COLOUR_TEXT_REGION 19 694 28 694 50 STRAND 57 699 62 COLOUR_TEXT_REGION 57 699 62 699 51 STRAND 71 699 78 COLOUR_TEXT_REGION 71 699 78 699 51 STRAND 90 699 95 COLOUR_TEXT_REGION 90 699 95 699 51 STRAND 101 699 106 COLOUR_TEXT_REGION 101 699 106 699 51 HELIX 4 699 15 COLOUR_TEXT_REGION 4 699 15 699 50 HELIX 19 699 28 COLOUR_TEXT_REGION 19 699 28 699 50 STRAND 57 700 63 COLOUR_TEXT_REGION 57 700 63 700 51 STRAND 72 700 78 COLOUR_TEXT_REGION 72 700 78 700 51 STRAND 89 700 95 COLOUR_TEXT_REGION 89 700 95 700 51 STRAND 101 700 106 COLOUR_TEXT_REGION 101 700 106 700 51 STRAND 112 700 112 COLOUR_TEXT_REGION 112 700 112 700 51 HELIX 2 700 15 COLOUR_TEXT_REGION 2 700 15 700 50 HELIX 20 700 27 COLOUR_TEXT_REGION 20 700 27 700 50