SILENT_MODE
BLOCK_FILE jp_IDq5mro.concise.blc
MAX_NSEQ 417
MAX_INPUT_LEN 419
OUTPUT_FILE jp_IDq5mro.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 184 406   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 407 184 416 H SPACE
SUB_CHARS 1 407 184 416 E SPACE
SUB_CHARS 1 407 184 416 - SPACE
STRAND 22 410 27
COLOUR_TEXT_REGION 22 410 27 410 51
STRAND 38 410 45
COLOUR_TEXT_REGION 38 410 45 410 51
STRAND 52 410 60
COLOUR_TEXT_REGION 52 410 60 410 51
STRAND 67 410 73
COLOUR_TEXT_REGION 67 410 73 410 51
STRAND 82 410 88
COLOUR_TEXT_REGION 82 410 88 410 51
STRAND 105 410 112
COLOUR_TEXT_REGION 105 410 112 410 51
STRAND 117 410 122
COLOUR_TEXT_REGION 117 410 122 410 51
STRAND 132 410 138
COLOUR_TEXT_REGION 132 410 138 410 51
STRAND 163 410 165
COLOUR_TEXT_REGION 163 410 165 410 51
HELIX 147 410 155
COLOUR_TEXT_REGION 147 410 155 410 50
HELIX 177 410 182
COLOUR_TEXT_REGION 177 410 182 410 50
STRAND 23 415 27
COLOUR_TEXT_REGION 23 415 27 415 51
STRAND 38 415 44
COLOUR_TEXT_REGION 38 415 44 415 51
STRAND 52 415 61
COLOUR_TEXT_REGION 52 415 61 415 51
STRAND 67 415 72
COLOUR_TEXT_REGION 67 415 72 415 51
STRAND 82 415 88
COLOUR_TEXT_REGION 82 415 88 415 51
STRAND 105 415 112
COLOUR_TEXT_REGION 105 415 112 415 51
STRAND 116 415 122
COLOUR_TEXT_REGION 116 415 122 415 51
STRAND 132 415 138
COLOUR_TEXT_REGION 132 415 138 415 51
STRAND 163 415 165
COLOUR_TEXT_REGION 163 415 165 415 51
HELIX 147 415 155
COLOUR_TEXT_REGION 147 415 155 415 50
HELIX 177 415 182
COLOUR_TEXT_REGION 177 415 182 415 50
STRAND 22 416 28
COLOUR_TEXT_REGION 22 416 28 416 51
STRAND 39 416 46
COLOUR_TEXT_REGION 39 416 46 416 51
STRAND 52 416 59
COLOUR_TEXT_REGION 52 416 59 416 51
STRAND 68 416 73
COLOUR_TEXT_REGION 68 416 73 416 51
STRAND 82 416 89
COLOUR_TEXT_REGION 82 416 89 416 51
STRAND 104 416 112
COLOUR_TEXT_REGION 104 416 112 416 51
STRAND 118 416 123
COLOUR_TEXT_REGION 118 416 123 416 51
STRAND 132 416 139
COLOUR_TEXT_REGION 132 416 139 416 51
STRAND 164 416 165
COLOUR_TEXT_REGION 164 416 165 416 51
HELIX 147 416 155
COLOUR_TEXT_REGION 147 416 155 416 50
HELIX 176 416 182
COLOUR_TEXT_REGION 176 416 182 416 50