SILENT_MODE
BLOCK_FILE jp_zf4tw4L.concise.blc
MAX_NSEQ 1112
MAX_INPUT_LEN 1114
OUTPUT_FILE jp_zf4tw4L.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 149 1101   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1102 149 1111 H SPACE
SUB_CHARS 1 1102 149 1111 E SPACE
SUB_CHARS 1 1102 149 1111 - SPACE
HELIX 2 1105 8
COLOUR_TEXT_REGION 2 1105 8 1105 50
HELIX 14 1105 21
COLOUR_TEXT_REGION 14 1105 21 1105 50
HELIX 30 1105 56
COLOUR_TEXT_REGION 30 1105 56 1105 50
HELIX 63 1105 90
COLOUR_TEXT_REGION 63 1105 90 1105 50
HELIX 94 1105 105
COLOUR_TEXT_REGION 94 1105 105 1105 50
HELIX 108 1105 115
COLOUR_TEXT_REGION 108 1105 115 1105 50
HELIX 125 1105 146
COLOUR_TEXT_REGION 125 1105 146 1105 50
HELIX 2 1110 8
COLOUR_TEXT_REGION 2 1110 8 1110 50
HELIX 14 1110 21
COLOUR_TEXT_REGION 14 1110 21 1110 50
HELIX 30 1110 56
COLOUR_TEXT_REGION 30 1110 56 1110 50
HELIX 63 1110 90
COLOUR_TEXT_REGION 63 1110 90 1110 50
HELIX 94 1110 105
COLOUR_TEXT_REGION 94 1110 105 1110 50
HELIX 108 1110 114
COLOUR_TEXT_REGION 108 1110 114 1110 50
HELIX 125 1110 146
COLOUR_TEXT_REGION 125 1110 146 1110 50
HELIX 2 1111 8
COLOUR_TEXT_REGION 2 1111 8 1111 50
HELIX 14 1111 21
COLOUR_TEXT_REGION 14 1111 21 1111 50
HELIX 30 1111 55
COLOUR_TEXT_REGION 30 1111 55 1111 50
HELIX 62 1111 90
COLOUR_TEXT_REGION 62 1111 90 1111 50
HELIX 95 1111 116
COLOUR_TEXT_REGION 95 1111 116 1111 50
HELIX 125 1111 146
COLOUR_TEXT_REGION 125 1111 146 1111 50